Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04170 ATGGCGGATCAATGCTCTAATGAAGGCTCCAGCAGTAGCAATATTTCTGCAGAGTGTTCAGATTCAACAGTTCAGCTCAATATCAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCCATTTCATCATTCAAAGAGAAAATTGCAAATGAAACCGGTGTTCCAGTTAGTCAGCAACGACTGATTTTCAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTACCATGTTGAGAATGGGCATACGTTGCATTTAGTTGAAAGACAACCAAATCAGTCACAGTCTTCTGGCGCGAGATCTAGCGAGCCAACTGGAACAAATAGTAACAGAGGAAATGATGTAGGCTCAGGGGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACTTTTAATGTGGGGGAACAAGGTGAAGGCATTGTTCAAGACCTCACCCGGGTTATTGGGGCAGTTTTGAATTCTATTGCAAATGGTGGCCAGAACACAATTAGTGTTCCTAATGCTACACAAACTCCAGCTCCACCAGGGAATGAAACTGAAGGAGTGCATGCTGGAAATCAGGTACCATCTGGACAGACATTTCCTGGTCAGGCATTCCAATCTCTGCCTCAAGTTGCTCAGATTCCTATTGCTGCAGGAGCAATACCCATTCCTTCTATCAATGCACCAATTCCTCATTCATTGAACACGCTGTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACACAATGGTTATTTGCCAAATCTGTCTTCAACTGACCCTGGAGATCGACGAGTGGAATTGCCTTCCAATACACAGGGGTTGCCGACAATTGAAGCATTAACCACTGTATTGCATCGTGCAGAACAGTTGCTTGGTGGTCAAGCTGTTGCTGCGCTATCTCATATTGCAGGACGCTTGGAGCGAGAGGGAACTTCTGCTGATCTTGGTGTAAGGGGTCAAATACTGTCAGAATCAGTGCAGATAGGACTTGCTATGCAACATTTAGGTGCTCTTCTGCTTGAACTTGGCCGAACAATGTTGACACTGCGTATGGGACAGTCTACTGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCAATCAGGGCCAAATCCTATAATGGTGCAGCCCTTCCCACTTCAGACAAGCTCTCTCTTTGGTGGTCCTGTTCCTTCTCCAACTCCTGCACCTTTAGGTGCCATTGGTATTGGAAGTGCTCCTAGGAACGTAAACATTCACATACATGCTGGTACCTCTCTCACACCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGAACAAGAAGTGAAAACCGTAATGAGCCTGGCTTAGGTGATTCAGGTTCAACACGAGTATTACCTGTTAGAAATGTCATATCAGCAACTCTCCCATCGAACCCTCCTGGTGTTGGAGTTGCTAGTAGCACACAAACTGGATTTGGTACTTCTACTTCTCAGCCACCACCGGATTCAGTTCCAATTTCATCTATTGTAGCTGAAATCAATTCTCGCCTTAGAAACTCCATTGGTAATATGCAAGGAGAGAACACAGTTCTGTCAGGTGGATTTGGTACTTCTACTTTGCAGCCACCACCAGATTCAGCTCCATTTTCATCTATTGTAGCTGAAATCAATTCTCGCCTTAGAAACTCTATTGGTAATATGCAAGGAGATAACACAGTTCTGTCAGGCCAAATGGAATCAACTAGCAGGGGATTGTCTTCTGGATCTGAATCAAGACCTGCACTGGGAAATGAACAGCAGGATACTGGGACTGCCACTCCATCTTCTATTGGTTGCACTTCTGAAAGTGGAGTAGAGAAGCCCCACACCGAGGCAATCCAAACCTGTAGTAATGACGAGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGGTTTACAAAGTTGTTCCAGTGGAGAAACAACGGTAAAATCAGAAAAAGTACTGGATGCTCCATCTGTAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAGCTGCTCCACTAGGTTTGGGTATGAGTGGTTTGGAGCGTAAGAGGCGAAGTAGACTTCAACCTCCTGTAGGTAAAAGTGCTGATGATGGATCATCCAGTTCTTCCATCAATCAAAGTCAGCAAACAAGAACAGATGGTCAACATATATTACAAACTCTCGCGAGTCATGGATCTGCTGTGAATTTGAGAAATGCTAATAGGCCATCCCAGCGGCCCTTGCCCTCCAGTGATAGCCAGATTGATGTGGGTGGTTTAATGTCTCAAGTTTTACATAGCCCCGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACAGGAGTTGACTCACCTGATGGCTTGAGGAACATGTTGCAACAATTCACTCAGAGCCCACAGATGATGAATACGGTCAATCAGATTGTCCAACAGGTTGGCGGTCAGGATATGGGGAGTATGTTCACTGGAATGGAAGGAGGGCAGGGTGGTGGTATTGATTTTTCAAGGATGTTTCAACAGATGATGCCTATTGTATCTCAAGCCCTTGGTGGGGGAAATCCTCCCTCACTATTCCCTGCTGTAGGACCAGAAGCCCGTGCACGCAGAGATGGAACAATTACCAGAGATGAAAGTTCTAATAATCGAAGTTTACAGCTTGACCTTCAACCAGTGGCAGAGAGGATTGATCGCCTTAGTCCACCGACAGATGTTTTCCGTGCTGTAGCTGAAAATGCTGTGCAGCTATCTGGCAGTGGAAATGCTTCTAATGATCTTTTGGATGAGTTATGCAGGAATGAGAGTCTTGCCAGTGAATATGTGGAGATGTTGCGATATGATGTAAGTCAGATGCTTGAGGAACACTCTGAGCCGGACAAGTCCTAA 2910 0.4478 MADQCSNEGSSSSNISAECSDSTVQLNIKTLDSRIYSFQVDKNMPISSFKEKIANETGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQSSGARSSEPTGTNSNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVQDLTRVIGAVLNSIANGGQNTISVPNATQTPAPPGNETEGVHAGNQVPSGQTFPGQAFQSLPQVAQIPIAAGAIPIPSINAPIPHSLNTLSEFINRMEQTLSHNGYLPNLSSTDPGDRRVELPSNTQGLPTIEALTTVLHRAEQLLGGQAVAALSHIAGRLEREGTSADLGVRGQILSESVQIGLAMQHLGALLLELGRTMLTLRMGQSTAESVVNAGPAVYISQSGPNPIMVQPFPLQTSSLFGGPVPSPTPAPLGAIGIGSAPRNVNIHIHAGTSLTPIVSAIGSRPNNGEGTRSENRNEPGLGDSGSTRVLPVRNVISATLPSNPPGVGVASSTQTGFGTSTSQPPPDSVPISSIVAEINSRLRNSIGNMQGENTVLSGGFGTSTLQPPPDSAPFSSIVAEINSRLRNSIGNMQGDNTVLSGQMESTSRGLSSGSESRPALGNEQQDTGTATPSSIGCTSESGVEKPHTEAIQTCSNDERDVLVDKFVSSSSNQGLQSCSSGETTVKSEKVLDAPSVSERRDVTEPAKAAPLGLGMSGLERKRRSRLQPPVGKSADDGSSSSSINQSQQTRTDGQHILQTLASHGSAVNLRNANRPSQRPLPSSDSQIDVGGLMSQVLHSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIVQQVGGQDMGSMFTGMEGGQGGGIDFSRMFQQMMPIVSQALGGGNPPSLFPAVGPEARARRDGTITRDESSNNRSLQLDLQPVAERIDRLSPPTDVFRAVAENAVQLSGSGNASNDLLDELCRNESLASEYVEMLRYDVSQMLEEHSEPDKS. 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04170 969 Gene3D - 12 108 - -
Seca7g04170 969 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Seca7g04170 969 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Seca7g04170 969 MobiDBLite consensus disorder prediction 91 128 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 709 728 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 174 193 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 566 626 - -
Seca7g04170 969 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 968 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 92 122 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 741 764 - -
Seca7g04170 969 SUPERFAMILY Ubiquitin-like 16 98 IPR029071 -
Seca7g04170 969 PRINTS Ubiquitin signature 34 54 IPR019956 -
Seca7g04170 969 PRINTS Ubiquitin signature 55 75 IPR019956 -
Seca7g04170 969 PRINTS Ubiquitin signature 76 97 IPR019956 -
Seca7g04170 969 MobiDBLite consensus disorder prediction 434 458 - -
Seca7g04170 969 FunFam Large proline-rich protein BAG6 16 109 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 434 505 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 466 505 - -
Seca7g04170 969 CDD Ubl_ubiquitin_like 26 93 - -
Seca7g04170 969 SMART ubq_7 24 95 IPR000626 GO:0005515
Seca7g04170 969 MobiDBLite consensus disorder prediction 644 728 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 644 662 - -
Seca7g04170 969 MobiDBLite consensus disorder prediction 566 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04170 Seca-Chr7 124058328 124069569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04170 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 8.19e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04170 - - gmx:100783611 1325.46