Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04161 ATGCCCAACAGTGAAAACTATGTTTGGGAAATAAATGCAAGCTGTTTAAGATTTGAAAAGCAAATTGCATCTGGATCTGTATGTGATTTGTATAAAGGTTTTTACTGTAATCAAGATGTGGCTATCAAAGTCTTTAAGGATGGTTGTCTGAATGAAGATGCAAAGAGGGAGTTTGCACAGGAAGTCGATATCCTGAGTAAAATTCAGCACAAGAATGTTATCAAATTTATTGGTGCCTGTACAAAGCCAAACCTTTATCTCGTCACAGAGTATTTGTCTGGTGGAAATATGTATGAATTTCTGCATATACAGAAAGTCATCCTTACCCTTCCATCTTTGCTCAAAGTAGCAATTGATGTTTCTGAAGGAATGAATTACTTGCATCAGAGAGATATTATACATAGAGACCTCAAAGCTGCTAATCTTTTAATGGATGAGAAATGGGTAGTTAAGGTTGCTGATTTTGGTGTAGCCAGATTGCAAGATCAGTCTGGTATCATGACTGCAGAAACTGGAACTTACCGGTGGATGGCCCCGGAGGTTATTGAACATAAGCCATATAATCACAAAGCCGATGTTTTTAGCTTTGGGATTGTTCTTTGGGAGCTGCTGACAGGAAAGCTTCCTTATGAACATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTACAAAAGGATTTGAGGCCTGAAATTCCAAGAGATACGCATCCAAAGTTAGTGGAATTGCTCCTCTGGTGCTGGCACAAAGATCCATCTTTAAGACCTGATTTCTCAGAAATTCTGATGTTTCTGCAGCACATTACCAAGATGGTATTGGGAGGAATCTAG 828 0.3937 MPNSENYVWEINASCLRFEKQIASGSVCDLYKGFYCNQDVAIKVFKDGCLNEDAKREFAQEVDILSKIQHKNVIKFIGACTKPNLYLVTEYLSGGNMYEFLHIQKVILTLPSLLKVAIDVSEGMNYLHQRDIIHRDLKAANLLMDEKWVVKVADFGVARLQDQSGIMTAETGTYRWMAPEVIEHKPYNHKADVFSFGIVLWELLTGKLPYEHLSPLQAAVGVVQKDLRPEIPRDTHPKLVELLLWCWHKDPSLRPDFSEILMFLQHITKMVLGGI. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04161 275 Gene3D Transferase(Phosphotransferase) domain 1 94 272 - -
Seca7g04161 275 Pfam Protein tyrosine and serine/threonine kinase 16 263 IPR001245 GO:0004672|GO:0006468
Seca7g04161 275 Gene3D Phosphorylase Kinase; domain 1 7 93 - -
Seca7g04161 275 SMART serkin_6 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04161 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca7g04161 275 FunFam Kinase suppressor of Ras 1 5 92 - -
Seca7g04161 275 ProSiteProfiles Protein kinase domain profile. 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g04161 275 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 267 - -
Seca7g04161 275 PIRSF ILK 2 272 - -
Seca7g04161 275 CDD STKc_MAP3K-like 22 264 - -
Seca7g04161 275 SUPERFAMILY Protein kinase-like (PK-like) 6 268 IPR011009 -
Seca7g04161 275 PRINTS Tyrosine kinase catalytic domain signature 89 102 IPR001245 GO:0004672|GO:0006468
Seca7g04161 275 PRINTS Tyrosine kinase catalytic domain signature 126 144 IPR001245 GO:0004672|GO:0006468
Seca7g04161 275 PRINTS Tyrosine kinase catalytic domain signature 191 213 IPR001245 GO:0004672|GO:0006468
Seca7g04161 275 PRINTS Tyrosine kinase catalytic domain signature 235 257 IPR001245 GO:0004672|GO:0006468
Seca7g04161 275 PRINTS Tyrosine kinase catalytic domain signature 172 182 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04161 Seca-Chr7 123872717 123876015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04161 1 271 MAP Kinase Kinase Kinase AT4G35780 62.868 1.41e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca7g04161 PK_Tyr_Ser-Thr 2.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04161 - - gmx:100818047 427.557