Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04141 ATGCTCGACTCAGTGCTTCTAGCGCTTTTCTTGCCCTGTCTCGGCATGAGCGCTGTCTTCATAGTCTACATGTGCCTTCTCTGGTACGCCACCACTCACCAGCCAGACATCAGGCTACCGGCTAAGCCCGTCACCGAGAAGGGCCTCTCCCTGTCGGAGCTTGAAAAGTTACCCAGAATCACCGGTAAAGAGCTTGTCACCGGGACCGAATGCGCCGTGTGCCTCGACGAGATCGGGAACGACCAACCGGCACGTGTGCTTCCTGGATGCAACCATGGTTTCCATTTGGACTGCGCTGACACCTGGCTTTCCAAGCATCCTCTTTGCCCGGTTTGTAGAGCCAAACTCGATCCCAATCTCTTCACTCCCTCTGAAAATAATCCATGTTGA 390 0.5462 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHQPDIRLPAKPVTEKGLSLSELEKLPRITGKELVTGTECAVCLDEIGNDQPARVLPGCNHGFHLDCADTWLSKHPLCPVCRAKLDPNLFTPSENNPC. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04141 129 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Seca7g04141 129 SMART ring_2 71 112 IPR001841 -
Seca7g04141 129 Pfam Ring finger domain 70 113 IPR001841 -
Seca7g04141 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 119 IPR013083 -
Seca7g04141 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Seca7g04141 129 SUPERFAMILY RING/U-box 70 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04141 Seca-Chr7 123441930 123442319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04141 1 129 C3H Transcription Factor Family AT5G42200 55.147 9.13e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04141 K19037 - gmx:100817919 221.09