LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g04104	ATGGAAGAAGTGGAGCTAGCTTCTGATTCTCATTTAGAACAAGGCCTAGCAACATCTAAAATGGACCAACACTCTAAACAAACCAAAACGGAGAGTGTTTCATTTTTTGGCTTGTTTTCTGCTGCTGATACAACTGACTATATCTTAATGTTCCTCGGAAGCGTTGGTGCTTGTGTCCATGGTGCAGCTCTTCCTGTTTTCTTTATTTTGTTCGGCCGTATGATTGATTCTTTGGGACATCTTTCTAAACACCCTCACAAATTGTCATCACGAATTTCTGAGCATGCTTTGTACTTGGTCTATCTTGGAGCCATTGTTCTGGTATCGGCTTGGATGGGTGTTGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCTCGTTTGCGTTTAAAATATTTGCAGTCAGTGTTAAAGAAAGATATTAATTTCTTTGACAATGAAGCCAGGGATGCAAATATCATTTTCCACATCTCCAGTGATGCAATATTGGTACAAGATGCAATCGGTGACAAGACAGGCCATGCCATGCGTTACCTTTCTCAATTCATTGTTGGATTTGCTATTGGATTTACATCAGTGTGGCAGCTTACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCAGGGGGAGCTTATACAATAATTATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAAGCTGGGAAGGTTGCTGAAGAGGTAATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTCGTTCCTACTCTAAGTCACTTGATAATGCTCTAAAGCTGGGAAAGAAGAGTGGTTTTGCAAAAGGGATTGGAGTAGGCTTTACATATGGGTTGTTATTTTGTGCTTGGGCATTGCTTCTTTGGTATGCTAGCATACTTGTGAGGCATCATAAGACAAATGGAGGGAAAGCTTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCACTTGGTCAAGCTGCTCCAAACCTTGCTTCCATTGCTAAAGGGCGTGCAGCTGCAGCCAATATCATGAACATGATTGCATCTGTCTCAGACACTTCAAAAAAGTTGGATGATGGCACTGTTTTGCCACAAGTAGCAGGGAAAATTGAGTTTTGTGATGTCTGCTTTGCTTACCCTTCAAGATCCAATATGGTCTTTGAAAATTTGAGCTTCACAGTGAGTGCTGGGAAGACTGTAGCAATTGTTGGTCCTAGTGGTTCCGGAAAGAGCACTATCATTTCCATTATTCAACGGTTCTATGACCCTACTTCAGGTAATTAA	1296	0.4128	MEEVELASDSHLEQGLATSKMDQHSKQTKTESVSFFGLFSAADTTDYILMFLGSVGACVHGAALPVFFILFGRMIDSLGHLSKHPHKLSSRISEHALYLVYLGAIVLVSAWMGVAFWMQTGERQTARLRLKYLQSVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAMRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVRSYSKSLDNALKLGKKSGFAKGIGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLASIAKGRAAAANIMNMIASVSDTSKKLDDGTVLPQVAGKIEFCDVCFAYPSRSNMVFENLSFTVSAGKTVAIVGPSGSGKSTIISIIQRFYDPTSGN.	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g04104	431	Gene3D	-	364	431	IPR027417	-
	Seca7g04104	431	Pfam	ABC transporter transmembrane region	51	323	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Seca7g04104	431	Pfam	ABC transporter	392	430	IPR003439	GO:0005524
	Seca7g04104	431	SUPERFAMILY	ABC transporter transmembrane region	42	347	IPR036640	GO:0005524\|GO:0016020
	Seca7g04104	431	PANTHER	ABC TRANSPORTER B FAMILY	17	430	IPR039421	-
	Seca7g04104	431	CDD	ABC_6TM_Pgp_ABCB1_D1_like	50	347	-	-
	Seca7g04104	431	FunFam	ABC transporter B family member 1	37	367	-	-
	Seca7g04104	431	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	51	339	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Seca7g04104	431	MobiDBLite	consensus disorder prediction	1	25	-	-
	Seca7g04104	431	Gene3D	ABC transporter type 1, transmembrane domain	37	363	IPR036640	GO:0005524\|GO:0016020
	Seca7g04104	431	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	364	431	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g04104	Seca-Chr7	122640361	122642685	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g04104	23	431	Calmodulin-binding Proteins	AT2G36910	46.341	1.30e-125	392

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g04104	K05658		-	gmx:100787093	738.413