Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04054 ATGGCTTCCGTAGAAGAAAAGATTAAAATTGGTGGAGTTGGAGTTGGAGGATTAGTTGTTGGGGGTCAAACTCAAACTCAAACTCTTGTTGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTGTGGGGTCAGAAAGACTTTGAATTCGGAGTCATGGCATGCTTGTGCAGGCCCACTTGTATCCTTGCCTCAGGTGGGGAGCCTTGTATTTTACTTCCCTCAGGGACACAGTGAGCAGGTGGCAGCTTCCACTAGAAGAACAGCAACCTCCCAGATTCCAAACTATCCCAATCTTCCATCTCAGTTGCTGTGCCAAGTTAAAAATGTCACACTACATGCAGATAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAACCACTTAATTCTGAAAAAGAGGTGTTTCCTATATCTGATTTTGGGTCAAAGCATAGTAAACATCCCAGTGAATTTTTCTGCAAAACTTTGACTGCTAGTGATACCAGCACACATGGTGGCTTTTCTGTTCCACGCAGGGCAGCAGAAAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACCCAAGAACTTGTTGTTAGAGATTTGCATGATAATACCTGGACATTTCGACATATATACCGGGGTCAGCCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAACTAAGAGTTGGTGTGAGGCGTGTTAATCGTCAACAGACAACATTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATAGAAGCTCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTGGCTAAATACAGAAAAGCTGTATATGGGACTCAGGTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATACATGGGTACAATTGTTGGTATTAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAATGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCGTTGACTTCAAGTCTAAAAAGGCCATTACAATCTGGACTTTTGGAAAATGAGTGGGGAACTTTAAGAAGACCTTTTATGAAAGTTCCTGAAAATGGAACAATGGAGCTCTCAAACTCAATACCAAATCTCTACCAAGAACAACTGATGAGGATGCTTTTGAAACCCCATGTTATCAACAATAATGGAGCCTTTTTATCTGCCATGCAACAAGAATCTGCTGCTGCAAGAGGTCCTTTGCAAGAGATGAAGACCATACTGGCAACAGAGAACCAAAAAGTTCATATTGCAAATACAGAAAGCATGCCACTAAGAAATCTACATTCTCAATCTGTCCCTGACCAGCCTAATGCCTTAAACATGCATTCATTGTTGAAAAATGATCAACATGAAAAATTGCATCCTCTGGCCAAAATTGAGAATCATCTACCTTCTGGAACAGTAACTGACAAGTCAAAATTAGAGCCTGAGATGATGCCTAATCATGTGTTTGATTTCCCTTCCATGGAAGGCTGCAACACTGAAAAAATGGCTACAAATCCTGTTAACCCCCAAATCCTAGCAAGCCAATTGACATTCCATAATCAAAACCAGAATCCATTACTCACTCAATCTAGTCAATGGCCTATGCAGCCTCAATTAGAATCATCAATATCTCATCCTCAGCTGATTGATGTGGCTCAATCTGACCCTGCTATTGTAAATGGCATGCTTCCTCAGCTAGATATTGATGAATGGATGATGTATTCTTCTTGCCAACCTTTTGCTGGGCAAAACAGATCAACTGGGCCTTTATCAGATTTGCAAGAACATACCTCCCTTCAACCACAAGCAGTGAATCCCTCATTACCTTCAATGAACCAAGAAGTGTGGGATCATTATGTCAAGAATATGAAGCTTTTATCTCAAGCGGATCAGCTAACATCCCTCTCTCAGCCAGGGCTGTATGGTGTCAATGGTATATCTAGCTCAAACAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGTTAGTAACAGTGTAAGCACCACCATGGTTGATCCATCTACCTCAAGTACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGATTTTCAGCATCCACAAGATTGCATGGTGGGCAACTTGAGTTCAAGTCAGGATGGTCAGTCTCAGATAACCACTGCAAGTCTAGCAGAGTCACATGCCTTTTCTCTTAGAGACAACTCAGGTGGTACATCTTCAAGCCATGTTGATTTTGATGAAAGCAGTTTTCTGCAGAATAATTCATGGCAGCAAGTAGCTGCACCACCCATCCGAACCTACACCAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGCTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGATACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGGTGCGTCCGCTGTATCAGAATTTTATCACCTTCAGAGGTTCAGCAAATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGAGCGTTGCAAGGGATCAATGTTTGA 2832 0.4227 MASVEEKIKIGGVGVGGLVVGGQTQTQTLVAEMKLLKEMQEHCGVRKTLNSESWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVKNVTLHADKETDEIYAQMSLQPLNSEKEVFPISDFGSKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSSFTIFYNPRACPSEFVIPLAKYRKAVYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLENEWGTLRRPFMKVPENGTMELSNSIPNLYQEQLMRMLLKPHVINNNGAFLSAMQQESAAARGPLQEMKTILATENQKVHIANTESMPLRNLHSQSVPDQPNALNMHSLLKNDQHEKLHPLAKIENHLPSGTVTDKSKLEPEMMPNHVFDFPSMEGCNTEKMATNPVNPQILASQLTFHNQNQNPLLTQSSQWPMQPQLESSISHPQLIDVAQSDPAIVNGMLPQLDIDEWMMYSSCQPFAGQNRSTGPLSDLQEHTSLQPQAVNPSLPSMNQEVWDHYVKNMKLLSQADQLTSLSQPGLYGVNGISSSNNLRDLSAESNNQSEICVNVDVSNSVSTTMVDPSTSSTILDEFCTMKDRDFQHPQDCMVGNLSSSQDGQSQITTASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNSWQQVAAPPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGINV. 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04054 943 Pfam AUX/IAA family 830 924 IPR033389 -
Seca7g04054 943 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Seca7g04054 943 SUPERFAMILY DNA-binding pseudobarrel domain 145 284 IPR015300 -
Seca7g04054 943 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 927 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca7g04054 943 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Seca7g04054 943 Gene3D - 153 256 IPR015300 -
Seca7g04054 943 Gene3D - 319 391 - -
Seca7g04054 943 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca7g04054 943 SMART B3_2 155 257 IPR003340 GO:0003677
Seca7g04054 943 ProSiteProfiles PB1 domain profile. 837 921 IPR000270 GO:0005515
Seca7g04054 943 FunFam Auxin response factor 319 391 - -
Seca7g04054 943 FunFam Auxin response factor 832 926 - -
Seca7g04054 943 FunFam Auxin response factor 153 257 - -
Seca7g04054 943 Gene3D - 834 926 - -
Seca7g04054 943 SUPERFAMILY CAD & PB1 domains 850 916 - -
Seca7g04054 943 CDD B3_DNA 154 255 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04054 Seca-Chr7 120759940 120765777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04054 28 941 B3 DNA Binding Superfamily AT1G19850 58.599 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca7g04054 AUX_IAA 4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04054 K14486 - gmx:100790289 1629.38