Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04051 ATGTTGCCAGCACAGAGGCTAGTCCAAGTAACTCTCCAGCACCCGTTATATCCGTTGGATTATTCGTTTTCATCAATTGATGAGGGATGGGTAATTATAAAGCTTAAAAAAAATTCCAAGGTGATGAAATCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTCAAAGTCTGTGTGGTAGACCACAATTTAGAGGTCAAACTACACGAACTTGTAAAACCTGACAAAGCAATTGTAGACTATAGAACAGAGATTACTGGTGTCTCTTCGCAAGATCTAGAGTCAGTGAGTTGCTCATTAGCTGATATACAGAAATCGATGAAGAAGTTGTTAGCAAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGAGTTCTGAAGATAGATCATGTTAGAGTGGTTGACACTGCATATATCTTCCACTCCTTGGATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGCCATGAAGTTCGGGAAAAGGGTGCTCCACATAACTGTCTAGATGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAAGATCAAACACGGTGTTGATAGAGAATTTCCATTAACGCTGGTTCAAGAGCCTGTTCCAGAAAGTGAGACTGCAAAGCTGCTTCTTCATGGGATACCAGCCACTGTGAACAGTGAAACACTACATGAAATTGTTCCTGGAGACATCACAATAAAACCAAAGCCTTCTAGGAAAGGTCCACGAGGAAAATATTCTGCCTTAGCCATCTTTAAGAACCCACAAGAGGCACATGCTGCCTATGAAAATGTCCAAGGCGACCAAACAAAGGATTCGTTTGGACGTCCTCAGAAACTTGTCACATTTCAGCTAAGCACAGGCAGGACTGTCAGTCTGTATGTTCGGAAAATGACAACCGGTGAACCCCATGACCCAAATCCATCTAAGAGAGCTTTACATGTGGATAATGCAGTTGATGTTTCCAAGAAAGCAAAAACGGATCCTGAAATTGAAGAGGCCCCGATAGGCTCTACTAAGGGTGACATTGGCACCTACTTGAATGAGATTGAAGCGTTGAATCAACGATTGAAGCAAAATGATTTGGAGATTGAATCATTGAGGGAACAAGTGAAACAAAAAGATTTTGAAATCGCCATGCTGCATAAAATGGTAAGCTCCATAAAAAAGCAAAAATAA 1233 0.4096 MLPAQRLVQVTLQHPLYPLDYSFSSIDEGWVIIKLKKNSKVMKSTAMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHELVKPDKAIVDYRTEITGVSSQDLESVSCSLADIQKSMKKLLANGTILVGHSLHNDLRVLKIDHVRVVDTAYIFHSLDGSIHRRPSLNSLCQAVLGHEVREKGAPHNCLDDACAAMKLVLAKIKHGVDREFPLTLVQEPVPESETAKLLLHGIPATVNSETLHEIVPGDITIKPKPSRKGPRGKYSALAIFKNPQEAHAAYENVQGDQTKDSFGRPQKLVTFQLSTGRTVSLYVRKMTTGEPHDPNPSKRALHVDNAVDVSKKAKTDPEIEEAPIGSTKGDIGTYLNEIEALNQRLKQNDLEIESLREQVKQKDFEIAMLHKMVSSIKKQK. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04051 410 SMART exoiiiendus 46 207 IPR013520 -
Seca7g04051 410 SUPERFAMILY Ribonuclease H-like 47 203 IPR012337 -
Seca7g04051 410 Gene3D - 42 212 IPR036397 GO:0003676
Seca7g04051 410 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 43 216 IPR047021 GO:0004527
Seca7g04051 410 FunFam Small RNA degrading nuclease 3 42 216 - -
Seca7g04051 410 CDD REX1_like 48 199 IPR034922 -
Seca7g04051 410 Coils Coil 368 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04051 Seca-Chr7 120725634 120732135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04051 23 212 C2H2 Transcription Factor Family AT3G27970 29.493 7.13e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04051 K14570 - gmx:100785565 611.683