Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04048 ATGGAAGGTGTTGATCATAGTGGTATGCAACGAAACAATTATGCATTTCCCAGACCCCCAAATCGATTGAATGCTATGCCTATCAATCAAATGGGTGCTACTGAGAATCATAAACCCTCTGGTATACCACCCTCTCACCCTAATACCAATACCTCACCTTCATCTCCTTATCCCCAATTTATGGCCTCTCAATCCCATTCTGGTTCCCAAAGATTGCGTTCTCCCAATTTGAGTCCAGGCTCATCCTCATCCCATTCAAGGTCTTTGTCTCAACCCCCTTTTTTCTCTCTGGATCCCTTGCCTCCATTGAGCCCTTCCCCTTATCGAGAACCCTTGGCTGCTACCTCCTTTTCTGACTCAATTTCAACAAATGTGCCTATGGAGGAAACCTTGGCTACCTCTCATGCCCCTTCCCCTAACCGTGGTCATGCTCTTCAGCTTGGTCATTGTCTTCCCCCTCGTAAAGGACACAGGCGTTCTAGCAGTGATTCCCCTTTAGGAATCTCGGATTTCATTCAGTCTGTCCCTCAGTTGGTTCCCCCTGCGGTGTGGAGTGATCGCCCCAATTCAGCTTCTAGGGGAGAAAACTCTGGTTTTGAGAAGCCAATTCAGTTGGTGTTGAAGGCGCCGTATAAGGATACGAATCGTGTTGATGGCTTTAGTGGAGAACCTATGGATCAGAAGAAAGAGGATGATTCCCTGGATGATTTATTTAGTGCATACATGAATTTGGACAACATTCATAGTATGAATTTTTCTGGAATGGAAGATAAGGATTTGGATAGCAGAACTAGTGGTTCCAAGACAGTTGAAAGCAGTGACAATGAAGTTGACAGTCATGCGAATGGAAAAGCTGCAGCCGGTGCTCAGGGGGCAAGTTCAAGCTGTTCGGATGAGAGGAGGGAAGGGGTTAAGAGGAGTTCTAATGGAGATATTGTGCCGGGCACCCGGCACCGGAGAAGTTTCTCATTGGACAGTTCTATAGAAAATTTTCGTATTGAAGATGGATCACCTAAGCTTCCTCCTTTACAAAATCGAGTTGGTCAACACTCGCCTAGCAATTCAATAGATGGTAAAACATCTGGAATCAGCATGGAGTTTGGAAATGGTGAATTCAACTCAGAGGAGATAAAGAAAATAATGGAAAATGATAAACTTGCAGAAATTGCCATGTCTGATCCCAAGCGTGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTCAAGGTCCAAACTCTTCAGACAGAGACAACCACATTGTCTACTCAGTTTACCAAATTACAGATGGATAATACAGAGCTTAAAAATGAGAATAACGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGGTATGTATATGCATTTACCTTGTACTTATATTTTAGTTAGCTCAATTCTGCTTTAA 1470 0.4388 MEGVDHSGMQRNNYAFPRPPNRLNAMPINQMGATENHKPSGIPPSHPNTNTSPSSPYPQFMASQSHSGSQRLRSPNLSPGSSSSHSRSLSQPPFFSLDPLPPLSPSPYREPLAATSFSDSISTNVPMEETLATSHAPSPNRGHALQLGHCLPPRKGHRRSSSDSPLGISDFIQSVPQLVPPAVWSDRPNSASRGENSGFEKPIQLVLKAPYKDTNRVDGFSGEPMDQKKEDDSLDDLFSAYMNLDNIHSMNFSGMEDKDLDSRTSGSKTVESSDNEVDSHANGKAAAGAQGASSSCSDERREGVKRSSNGDIVPGTRHRRSFSLDSSIENFRIEDGSPKLPPLQNRVGQHSPSNSIDGKTSGISMEFGNGEFNSEEIKKIMENDKLAEIAMSDPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNTELKNENNEYKLRLQSLEQQSQLKDGMYMHLPCTYILVSSILL. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04048 489 Gene3D - 392 455 - -
Seca7g04048 489 MobiDBLite consensus disorder prediction 1 111 - -
Seca7g04048 489 MobiDBLite consensus disorder prediction 255 368 - -
Seca7g04048 489 FunFam Transcription factor VIP1 isoform A 393 455 - -
Seca7g04048 489 MobiDBLite consensus disorder prediction 344 368 - -
Seca7g04048 489 Coils Coil 411 431 - -
Seca7g04048 489 MobiDBLite consensus disorder prediction 27 93 - -
Seca7g04048 489 SMART brlzneu 391 455 IPR004827 GO:0003700|GO:0006355
Seca7g04048 489 CDD bZIP_plant_RF2 396 468 IPR044759 GO:0003700|GO:0006355
Seca7g04048 489 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 67 476 - -
Seca7g04048 489 Pfam bZIP transcription factor 395 453 IPR004827 GO:0003700|GO:0006355
Seca7g04048 489 MobiDBLite consensus disorder prediction 130 168 - -
Seca7g04048 489 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 393 456 IPR004827 GO:0003700|GO:0006355
Seca7g04048 489 SUPERFAMILY Leucine zipper domain 395 451 IPR046347 GO:0003700|GO:0006355
Seca7g04048 489 Coils Coil 439 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04048 Seca-Chr7 120682088 120684848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04048 41 473 bZIP Transcription Factor Family AT4G38900 46.272 7.61e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca7g04048 bZIP_1 1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04048 - - gmx:100787636 635.95