Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04046 ATGGATGATCGTGAAAATGGAAGACACAAAGTAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGCAATTATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCAATCCTGCAGCGAGATACTGCAATTGCTGAACGAAACAGTGCATTAATGGAACGAGATAATGCAATTGCAACCTTTCAGTTTAGAGAAAAATCCTTGACCAAAGGCAGTATGTCACCATGCCCTCCAGGATGCCAAATCTCACGGGGAGTCAAGCATATACATCATTTGCAACAACAGGTAAACCATATACCTAATATGGTTGATGCTTCTTACAGCACACGGGAAATGCACACAAGTGATGCTCTCCCAGCTGCACCCATTCCTTCAGAGGCTGGGAAGTCTCGGCAGGCCAAGCGACCAAGGGAAGGTAAGTCAGTTTCACCTAAAAAGAAGACTCCAAAAACTACTAGAAAGGTCAAGAAGGAGAGTGAAGATTTAAATAAGGTGATGTTTGCCAATAGCAAGGCACATGAATGGAATAGTAGTCAGGAGATTATAAATGGAGGAGATGATCTTAACAAGCAGTTAACGGTGTCAAAGGCTGATTGGAAAGCTCAAGACTTGGCATTAAATCAGGTTGCATATGATGAGTCAACCATGCCAGCGCCAGTGTGTTCATGTACTGGTGTTCCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCTGCCTGTTGCACAACCACCTTATCAGTATATCCACTTCCAGCTGTACCCAACAAGAGGCATGCTCGGATAGGCGGTAGAAAAATGAGTGGAAGTGCTTTCAGTAAACTGCTTAGCCGGCTTGCAGCAGAAGGGCATGATCTGTCAAACCCAGTTGACCTTAAAGACAATTGGGCCAAACATGGGACAAATCGATATATCACGATAAAGTAG 1011 0.4451 MDDRENGRHKVDQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDTAIAERNSALMERDNAIATFQFREKSLTKGSMSPCPPGCQISRGVKHIHHLQQQVNHIPNMVDASYSTREMHTSDALPAAPIPSEAGKSRQAKRPREGKSVSPKKKTPKTTRKVKKESEDLNKVMFANSKAHEWNSSQEIINGGDDLNKQLTVSKADWKAQDLALNQVAYDESTMPAPVCSCTGVPRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFSKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04046 336 Pfam GAGA binding protein-like family 1 336 IPR010409 -
Seca7g04046 336 MobiDBLite consensus disorder prediction 137 187 - -
Seca7g04046 336 SMART GAGA_bind_2 1 336 IPR010409 -
Seca7g04046 336 MobiDBLite consensus disorder prediction 157 172 - -
Seca7g04046 336 PANTHER - 1 336 IPR010409 -
Seca7g04046 336 Coils Coil 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04046 Seca-Chr7 120643957 120647008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04046 62 336 BBR or BPC Transcription factor family AT5G42520 61.486 1.01e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Seca7g04046 GAGA_bind 8e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04046 - - gmx:100783502 573.163