Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04042 ATGGATGATCGGGAAAATGGAAGACACAAAGTAGATCAATATAAATCTGCTCAGGGACAGTTGCTATGGCAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGGAATTATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCAATCCTGCAGCGAGATACTGCAATTGCTGAACAAAACAATGCATTAATGGAACGAGATAATGCAATTGCAACCCTTCAGTTTAGAGAAAAATCCTTGACCAGTGGGAGTATGTCATCATGCCCTCCAGGATGCCAAATCTCACGGGGAGTCAAGCATATACATCATTTGCAGCAACAGGTAAACCATTTACCCAATATGGTTGATGCTTCTTACAGCACACGGGAAATGCACACAAGTGATGCTCTCCCAACTGCACCCATTCCTTCAGAGGCTGGGAAGCCTCGGCAGGCCAAGCGGCCAAAGGAAGGTAAGTCGGTTTCACCTAATAAGAAGACTCCAAAAACTAGAAAGGTCAAGAAGGAGAGTGAAGATTTAAATAAGATGATGTTTGCTAATAGCAAGGCACATGAGTGGAAGAGTAGTCAGGAGATCGTAAATGGAGGAGATGATCTTAACAAGCAATTAGAGCTGTCAAAGGCTGATTGGAAAGCTCAAGACTTGGCATTAAATCAGGTTGCATATGATGAGTCAACCATGCCAGCCCCCGTGTGTTCTTGTACTGGTGTTCCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCTGCTTGTTGCACAACCACCTTATCAGTGTATCCACTTCCAGCTGTGCCCAACAAGAGGCATGCTCGGATAGGCGGTAGAAAAATGAGTGGAAGTGCTTTCAGTAAACTGCTTAGCCGGCTTGCAGCAGAAGGGCATGATCTGTCAAACCCAGTTGACCTTAAAGACAATTGGGCCAAACATGGGACAAATCGATATATCACAATAAAGTAG 1020 0.451 MDDRENGRHKVDQYKSAQGQLLWQWLMQHQPSMKQIMGIMAERDAAIQERNLALSEKKAALAERDMAILQRDTAIAEQNNALMERDNAIATLQFREKSLTSGSMSSCPPGCQISRGVKHIHHLQQQVNHLPNMVDASYSTREMHTSDALPTAPIPSEAGKPRQAKRPKEGKSVSPNKKTPKTRKVKKESEDLNKMMFANSKAHEWKSSQEIVNGGDDLNKQLELSKADWKAQDLALNQVAYDESTMPAPVCSCTGVPRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFSKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04042 339 Pfam GAGA binding protein-like family 1 339 IPR010409 -
Seca7g04042 339 SMART GAGA_bind_2 1 339 IPR010409 -
Seca7g04042 339 MobiDBLite consensus disorder prediction 141 190 - -
Seca7g04042 339 MobiDBLite consensus disorder prediction 161 176 - -
Seca7g04042 339 Coils Coil 52 72 - -
Seca7g04042 339 PANTHER - 1 339 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04042 Seca-Chr7 120586740 120587869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04042 66 339 BBR or BPC Transcription factor family AT5G42520 62.162 1.02e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Seca7g04042 GAGA_bind 1.1e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04042 - - tpra:123887069 578.941