Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04019 ATGAAGATCCAGTGCGACGTGTGCACCAAAAACGAGGCTTCGGTATTCTGCACCGCCGACGAAGCCGCACTCTGTGACGGCTGCGACCACCGTGTCCACCATGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCGGCAAAACAATACCCTCTCTGCGATATTTGCAAGGAGAGAAGAGCTTTCCTGTTCTGTCAGCAAGACAGAGCGATTCTTTGCAAAGAGTGTGACTTCCCCATTCATTCTGCCAACGAGCACACCCAGAAGCATGATAGGTTCCTTCTCACTGGTGTTAAGCTCTCTTCTTCTGCTAACCTTTATTCAACAACAACACCTTCCAATTCCGTTTTGACCACTGCTTCTGATTCCAAGTCAAAGCCCCCTTCTGTTCACTCTTCTTCTAACCTTTCACATCAACCTTTCATCGCCAAAACCACTCCTTCCACAACCCTCGACAAGATTGGGGTAACTATGGAAGGAACCGGTTCCACAACTACTAGTAGCATATCCGAGTATTTGATAGAGACTCTCCCTGGCTGGCAGGTTGAAGACCTTCTTGATTCCTATTCTGTTCCCTTTGGTTTCTCTAAGCAGAGTGATGATATGTTGCCACTGTTTGATGCTGGTATTGAGGGGAATCTTGGTTCCTTCTCGCCAGAGGGTATGGGGATCTGGGTTCCTCAAGCACCACCTCCTCTGTATTCTTCACAAATGGATCGGGTGATTGGGCACAGTGAGACAAAGGAAGCCAACAACATGAAAGGCAACAGCAGATCAAGGTTGAGGGATGACAATTTCACTGTTCCACAGATTAGTCCTCAGTCAAATTCCAAGAGAACCAGATATCTATGGTAG 870 0.4805 MKIQCDVCTKNEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSAKQYPLCDICKERRAFLFCQQDRAILCKECDFPIHSANEHTQKHDRFLLTGVKLSSSANLYSTTTPSNSVLTTASDSKSKPPSVHSSSNLSHQPFIAKTTPSTTLDKIGVTMEGTGSTTTSSISEYLIETLPGWQVEDLLDSYSVPFGFSKQSDDMLPLFDAGIEGNLGSFSPEGMGIWVPQAPPPLYSSQMDRVIGHSETKEANNMKGNSRSRLRDDNFTVPQISPQSNSKRTRYLW. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04019 289 MobiDBLite consensus disorder prediction 116 146 - -
Seca7g04019 289 CDD Bbox1_BBX-like 5 47 - -
Seca7g04019 289 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Seca7g04019 289 MobiDBLite consensus disorder prediction 267 289 - -
Seca7g04019 289 Gene3D Classic Zinc Finger 1 99 - -
Seca7g04019 289 MobiDBLite consensus disorder prediction 251 266 - -
Seca7g04019 289 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca7g04019 289 SMART bboxneu5 53 100 IPR000315 GO:0008270
Seca7g04019 289 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Seca7g04019 289 FunFam B-box zinc finger protein 21 1 98 - -
Seca7g04019 289 CDD Bbox1_BBX-like 57 100 - -
Seca7g04019 289 MobiDBLite consensus disorder prediction 251 289 - -
Seca7g04019 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca7g04019 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04019 Seca-Chr7 120066992 120068525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04019 1 289 C2C2-CO-like Transcription Factor Family AT1G75540 47.164 9.44e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca7g04019 zf-B_box 9.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04019 - - lja:Lj5g3v0165540.1 411.764