Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g04014 ATGGCTGGGTTTTTCTCTCTAAGTGGAGGAGGAAGGGGAGGTCACCAACAAAAAGAAGAAGAAGAAAGAGAAGATAACCACCACAGTAACAGCCAATTCTTGTTCAGAAACGAAGAGATCTACAACAAGGGATTCGAGATATGGCCACAGCAACAGTCGTATCACCCAAACATGAGCAACTACTACTCGTTCGGTGTGGGCCCTAGCCGAAGGAACAACAACAACACCACAAACTCCTCGAACGTGAACGACGACGTTTCAGTGTCGTTCTCTGATGAGTCGACGAGATTCGGGTTCACGGTGATGAGGTCTGGAGGTTTAGGTGGCGGCATGAACTGTCAGGACTGTGGGAACCAAGCTAAGAAAGACTGTACACATCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCTGCAGCCAAACGCCGTGAACGACAGCAACAACTCTCTGCGTTGCAGCAGCAGCAAAATCAGCAGGAACAGCAGCAACAATTCCGAGGAGGAGGCGATCATTCAAAACGACATAACAGAGAAAATCAAGGTGCTGCAGGTTCTCTTGCTTGCGCTCCAGTACCTATCACCACCACAGGGTTGGAACTGGGACAATTCCCGCCTGAGTTGAACTCTCCGGCGGTTTTCCGGTGTGTGAAAGTGAGCGCAATGAACGCACAAGATGAGCGTTACGCGTATCAAACGGCTGTCAACATAGGAGGACATGTTTTCAAGGGAATTCTCTATGATCAAGGCTCAGACGGTCCTTACACCAATGCAGCTGCTGGTGAGGGTTCCTCTGGTGGTGAAGCACAGCCACAAAATCTCATAACTGCCACAACCACCGCCACAACTGGTGGTAACAACCTATTTGACTCTTCTTCACTCTACCCGGCTCCACTAAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 978 0.4969 MAGFFSLSGGGRGGHQQKEEEEREDNHHSNSQFLFRNEEIYNKGFEIWPQQQSYHPNMSNYYSFGVGPSRRNNNNTTNSSNVNDDVSVSFSDESTRFGFTVMRSGGLGGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQNQQEQQQQFRGGGDHSKRHNRENQGAAGSLACAPVPITTTGLELGQFPPELNSPAVFRCVKVSAMNAQDERYAYQTAVNIGGHVFKGILYDQGSDGPYTNAAAGEGSSGGEAQPQNLITATTTATTGGNNLFDSSSLYPAPLNAFMAGTQFFPPPRS. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g04014 325 NCBIfam LRP1 C-terminal domain 214 261 IPR006511 -
Seca7g04014 325 MobiDBLite consensus disorder prediction 158 178 - -
Seca7g04014 325 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 311 IPR007818 GO:0003700|GO:0006355
Seca7g04014 325 Pfam Domain of unknown function (DUF702) 110 263 - -
Seca7g04014 325 MobiDBLite consensus disorder prediction 14 32 - -
Seca7g04014 325 MobiDBLite consensus disorder prediction 1 32 - -
Seca7g04014 325 MobiDBLite consensus disorder prediction 154 198 - -
Seca7g04014 325 Coils Coil 154 174 - -
Seca7g04014 325 MobiDBLite consensus disorder prediction 65 87 - -
Seca7g04014 325 NCBIfam putative zinc finger domain, LRP1 type 112 154 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g04014 Seca-Chr7 119705225 119707358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g04014 1 325 C2H2 Transcription Factor Family AT1G75520 45.706 4.01e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca7g04014 DUF702 2.8e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g04014 - - gmx:100807290 425.631