Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03992 ATGTATCCAAACCGAGCCTTTTCTTCAGGATCCTATGCAGAGATGATGTCTGGGACTCCTTTATTGCCTCATGGCTACAATGAATCTGTAGGAGGACAAAATGAGTTGAAGTTTATCACATCTTTGGGTGACACAATGAATATGCAACCTATTGATGGCCATTCCAATGGTGCTGCTACAGGTGATCCAACATGCAACTCATATGCTGGTGCTGGAGATTCCCATGTTATTCCAAGGACACAATTGGGACTTGTAGACAGTGAGCAAAATGTACAGTGCCAAGGCTTGTCTCTTAGCCTAGGGACAGTGATGCCTTCTATTGCATCTGTCCCTACTTTCCAATATCAGTATCCCGGCACTGGTTTCTCCTCACTAATGAGTGCTTCTATTCCAAACTTGAAAGGTATTGCATCCTTTAAAGATGATGAGACCAGCCTACATAAGGAATTGAGAAATGCTGAATGCATGACATCTTTATCTTCTGGAGGCTTTCACAACACTATCAAAAGGGAGGGTTTGTATAATCCACACCCTTCAATGTGCCTTAATGAAGGCCAATCTGATCCATCCCTACATGGATCACCAGGTTTTCCTAACAATGTCCTAAACTCCCAATACCTTAAGGCAGCACAGGAGTTGCTAGATGAAATAGTTAATGTCAGAAAGGCTTTGAAGCAAACTGGATTGGAAAAACAACAAAGTTTCCGGGACATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAATATCTTCAGGCCCCAATGGGTCTACTGCAAACTCTTCATGTGAACTATCTCCTGCAGAACGACAGCATTTATTGGACAAGAAGACAAAACTTTTGTCCATGTTGGATGAGGTAGACAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGATATGGTTGCTGGGTGTGGATCAGCTGAACCATACACTGCACTTGCTTTGCGCACAATTTCTCGCCACTTTCGCTGTTTGCGTGATGCTATTAGTGGCCAAATTCAAGTGACTCAAAGAAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTACGTGGATCAGCAACTGAGACAACAAAAAGCCCTTCAGCAGCTTGGTGTGATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTCCGTGCATGGCTTTTTGAGCATTTCCTTCATCCATATCCCAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACTGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAGGAATTTGGTGATTCTGAGCTGAGCAGCAATCTTTTATCAGAAAATACACCCAAAGCTCCAAGAGAGGATGTTCAAATGTCTGATAATAAAAGGGAAGAGTCCCAGGAGCTTCATGGGCTGAAGTTGGACCATGCCTCTTCTACTTCAGAATTGGATAGAGGGATCCAAAGTATTGACCATGGAGCAAATGTCATGGATTCCAGAATTGGTAAATTGCAGGGTGACCAAAGGTTTAACATGAACAACAATAATAATAGTCCCTATTCAAGTGCACCTATGCCAATCAACCATAATGGTGATGGTTGCCTAATGGCTTCTACTCCTGCCACTTATGATTTATCAGAGTTGGGTAACTTTACAGTGAGTGGCCATGTCTCCCTTGCATTGGAATTGAGGAACTCAGAAAGTGATGGATTTGGAGTGTCCAATGATGACATCCATAAAAGACGTAATCAGACATTGGCTTCTTCCCCTGATAATGATTTGCTAGATTACCATTTCACAGACCCTGGAAAGCAACAACACAAGTTTGGTAATCCTCATCTATTACATGAGTTTGTTGTCTGA 1929 0.4287 MYPNRAFSSGSYAEMMSGTPLLPHGYNESVGGQNELKFITSLGDTMNMQPIDGHSNGAATGDPTCNSYAGAGDSHVIPRTQLGLVDSEQNVQCQGLSLSLGTVMPSIASVPTFQYQYPGTGFSSLMSASIPNLKGIASFKDDETSLHKELRNAECMTSLSSGGFHNTIKREGLYNPHPSMCLNEGQSDPSLHGSPGFPNNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSMQISSGPNGSTANSSCELSPAERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGSAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSELSSNLLSENTPKAPREDVQMSDNKREESQELHGLKLDHASSTSELDRGIQSIDHGANVMDSRIGKLQGDQRFNMNNNNNSPYSSAPMPINHNGDGCLMASTPATYDLSELGNFTVSGHVSLALELRNSESDGFGVSNDDIHKRRNQTLASSPDNDLLDYHFTDPGKQQHKFGNPHLLHEFVV. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03992 642 Pfam Associated with HOX 201 344 IPR006563 -
Seca7g03992 642 SMART prehox3 195 345 IPR006563 -
Seca7g03992 642 MobiDBLite consensus disorder prediction 245 273 - -
Seca7g03992 642 MobiDBLite consensus disorder prediction 475 494 - -
Seca7g03992 642 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Seca7g03992 642 SUPERFAMILY Homeodomain-like 387 453 IPR009057 -
Seca7g03992 642 Coils Coil 207 227 - -
Seca7g03992 642 MobiDBLite consensus disorder prediction 460 474 - -
Seca7g03992 642 CDD homeodomain 386 447 IPR001356 GO:0003677
Seca7g03992 642 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Seca7g03992 642 SMART HOX_1 386 450 IPR001356 GO:0003677
Seca7g03992 642 MobiDBLite consensus disorder prediction 235 273 - -
Seca7g03992 642 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 154 475 - -
Seca7g03992 642 MobiDBLite consensus disorder prediction 459 494 - -
Seca7g03992 642 Gene3D - 383 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03992 Seca-Chr7 118894460 118899108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03992 196 641 Homeobox Transcription Factor Family AT2G16400 47.484 1.02e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca7g03992 POX 9.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03992 - - gmx:100775682 997.653