Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03988 TTAGACCAATGGTTATTATATATTTTTGTTTTTGTTATCTCAGTGATTGTTAAAGCTAGCAGCGGACCCAGGTATGTGGTTGGTTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGATACAAGAGTGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCACGTGAACATCCTCTCGAGGGTGTTCTCCTTTATAGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCCGGTAATCTAGATTCTAACTTCTTGAAGGTTGTTTCAAGTGCAATAATAGATAAGTACATCGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTGGCCCTGCATCATTTTTATGGATGAGATCTATGCCATTGGTGGTCGTCGTTTTAGTGAGGGAACAGGTGTTGATCGTGAGATTCAAAGAACACATTTTGCTTAATCAGCTTGATGGGTTTGATCAACTTGGGAATGTAAAAATGATAATGGCAACAAACCGGCCTGATGTATTGGACCCTGCTCTCCTGCGTCCTGGAAGATTGGATAGAAAAATAGAAATTCCATTGCCAGATGAACAATCAAGGATGGAAATTCTAAAGTTCATGCTGCTGGGATTGCTAAGCATGGTGAAATAG 642 0.4097 LDQWLLYIFVFVISVIVKASSGPRYVVGCRSKVDKEKLTADTRVVLDMTTLTIMRALPREHPLEGVLLYRPPGTGKTLLARAIAGNLDSNFLKVVSSAIIDKYIGESARLIREMFGPASFLWMRSMPLVVVVLVREQVLIVRFKEHILLNQLDGFDQLGNVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPDEQSRMEILKFMLLGLLSMVK. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03988 213 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 62 118 - -
Seca7g03988 213 SMART AAA_5 62 193 IPR003593 GO:0016887
Seca7g03988 213 Pfam ATPase family associated with various cellular activities (AAA) 66 191 IPR003959 GO:0005524|GO:0016887
Seca7g03988 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 205 IPR027417 -
Seca7g03988 213 Gene3D - 192 205 - -
Seca7g03988 213 Gene3D - 39 191 IPR027417 -
Seca7g03988 213 ProSitePatterns AAA-protein family signature. 161 179 IPR003960 GO:0005524|GO:0016887
Seca7g03988 213 Pfam Proteasomal ATPase OB C-terminal domain 15 58 IPR032501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03988 Seca-Chr7 118808941 118810744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03988 62 208 Calmodulin-binding Proteins AT3G56690 42.038 1.71e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03988 K03064 - pda:103709302 247.669