Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03944 ATGTCATTCAAGAGTATTGTTCGTGAGCTCAAGGAAATGGGAGAGGGTATTGGCAACCTTTATAGAAGAGGGGCAGATTCCAAGCATGTGCATCGCCATGGAAAATCTCATATTGCACCAGAATGTTCCTTACCATCATCTTCATCTTCATCATCATCATCAACAACAACATCACAGAGCAGGTGGGCTAACTTACCCCCTGAGTTGCTACTGGACATAATTCAAAGGGTGGAAGCCAGTGAAACTTCCTGGCCTGCACGCAGAGCGCTTGTAGCATGTGCCTCAGTTTGTAAGTTGTGGAGAGAGATAACAAAGGATGTGGTGAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTGAAACAGCCTGGTCCAAGAGACAATCCAATCCAGTGTTTCATTAAGAGAGAAAGGGTGACTTCAACATATCGTTTATATCTTGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGCTTTTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGAGCTAGCAATACTTACATTGGAAAACTGAGGTCTAATTTTCTGGGAACCAAGTTTATGATCTTGGATGGTCAGCCCCCTCATGATTCTTCACTTCCATTGAATTGCAAGATGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAGGGTTGCTGCTGCTAACTATAAAGTGGCCACAGTATCTTATGAACTCAATGTTCTCCGTACAAGAGGTCCAAGGAGAATGCGGTGTACAATGCACTTAATCCCCATATCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTTGAACTTTACCAATTGCTTTAATGAGCATGCACCAGACATGCCCATTTCTAAAGGAAAGAAGCCAGAAGTTGAGTTTGGCTCAACTGGACCTAGCAATACTCCAGAATCAACCCAGAGTGCAAGAGAACCACTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGAGTTACAGTGGCTTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTTGCCAAAATGTTTCAGCAGCAGAACAAGAGAAAGTGATACTACAATTTGGGAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTTTCTGCTTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1269 0.4366 MSFKSIVRELKEMGEGIGNLYRRGADSKHVHRHGKSHIAPECSLPSSSSSSSSSTTTSQSRWANLPPELLLDIIQRVEASETSWPARRALVACASVCKLWREITKDVVKTPEQCGWLTFPISLKQPGPRDNPIQCFIKRERVTSTYRLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRASNTYIGKLRSNFLGTKFMILDGQPPHDSSLPLNCKMQQRVHLKQVLPRVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLNFTNCFNEHAPDMPISKGKKPEVEFGSTGPSNTPESTQSAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03944 422 CDD F-box_AtTLP-like 62 106 - -
Seca7g03944 422 SUPERFAMILY Tubby C-terminal domain-like 111 422 IPR025659 -
Seca7g03944 422 Gene3D - 55 108 - -
Seca7g03944 422 Pfam F-box domain 62 109 IPR001810 GO:0005515
Seca7g03944 422 MobiDBLite consensus disorder prediction 312 326 - -
Seca7g03944 422 Gene3D Tubby Protein; Chain A 120 422 IPR025659 -
Seca7g03944 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Seca7g03944 422 MobiDBLite consensus disorder prediction 32 61 - -
Seca7g03944 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Seca7g03944 422 MobiDBLite consensus disorder prediction 302 326 - -
Seca7g03944 422 MobiDBLite consensus disorder prediction 41 61 - -
Seca7g03944 422 SUPERFAMILY F-box domain 51 106 IPR036047 GO:0005515
Seca7g03944 422 PANTHER TUBBY-RELATED 36 420 - -
Seca7g03944 422 PRINTS Tubby superfamily signature 178 194 IPR000007 -
Seca7g03944 422 PRINTS Tubby superfamily signature 194 218 IPR000007 -
Seca7g03944 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Seca7g03944 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Seca7g03944 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Seca7g03944 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Seca7g03944 422 PRINTS Tubby superfamily signature 243 270 IPR000007 -
Seca7g03944 422 Pfam Tub family 123 417 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03944 Seca-Chr7 117095052 117098261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03944 28 422 TUB Transcription Factor Family AT1G47270 63.930 3.21e-173 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca7g03944 Tub 1.4e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03944 K19600 - gmx:100796250 738.028