Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03870 ATGAGAGTTCAAACAGAGGAAAAGTATGATGATGATGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAATAATGTATATGTCTACAGTGATGAGAGTGAGGACAATGAAGACAATGAAGATAGCGGTGATGAGGGTTCCATTCATTTCGGTGATGAAGATGATGCAGGTCAAAGAAAGGTGGTTAGGAACACAAGAGGCGAAATTGTGCAGCAGACATTGTTTTGTAACAGGGAAGGGAAAATACAAAGAAATAATCTAAAGAAGCGTGAACCAAGACCTGAAACTAGATGTGGTTGCTTTGCTTTATTATCTCTTCGTATTGACTTTAGCTCTATACGATGGTTTGTGAAAGAGTTCAATGATGATCACAATCATGATATGCTAGAAGAAAAGTACTGTCGAATGATGGCAGCTCATAGGAAAATGATTGAATCGGATATAATGGAAATGAACAACATGAGAAGTGCATCATTTGCAAGTTGTTGTGGAGTTGATGAGGAAAATAGGTTGCAACATCTTTTTTGGTGTGATGGTATTAGTCAGTTATATTACCAACTTTTTGGTGATGTCTTAGCATTTGATGCAACATATGGGAGGAATAAATATCGGTGTCCTTTGGTTATTTTTTCTGGTGTCAATCATTACAAACGCACAACAGATTTTGGTAGTGTTGTTGTGGCTAATGAGACAGAAGACACATATGCCTGGCTCTTGGAACAATTTAAAGATGCAATGAAGGGGAAGTCACCCACGGCTGTTATAACAAATGGTGATGTGGTAATGAGGAATGCGATAAGAAAAGTATTTCCAGAGGCGCATCATTGTTTGTGTTCTTGGCATTTGCTTCCCAATGCAACTGCCAATGTTGGTATTCCTGGTTTTGTTAAGGAGTTAGAGAAATGTATGTTTCCTAATGTTGAAGTTGCTAAATTTTGTCGTAGGTGGACAAATATGGTGACTAAGTTTCAATTGGAGGAGAACAATAAGATGAACGATTTGTTAGAGAAGAAGCACATGGGGGCTACTACATACATTACAGGACAATTTTTTGTTGCATGTCTTTGCTATATGCGATACAAAGAAGAGGAGGATGACTTTGCATGTATGTTGGGTGAGGCAGTATTGAGAACAAATTTGCAGCCATTAGAACGGTCGGCTTCTAGACATTTCACAAGGAATATATTCTTCATATTTCGCAAAGTCTTATTTAGAGCTGCACAGAACTTTGTTGTTGGTTGCAGGGAGTCAGCGATGTGGAACATTTACACTGTTAAGAGGTACCAAAGTGGCGGGAAAGAATGGTTTGTGTCTTTGTATCCACCATCAGAAGAATTCAAATGTTCTTGCCAGCGTATGGAGTCATATGGGTTGCCATGCCCCCACATTGTATGTGTTTTGGTTTACCTAGACTATGGTGAACTTCCTCAAAGTTAA 1470 0.3857 MRVQTEEKYDDDDDDDEEEEEEEEEEEEEEEEEGNNVYVYSDESEDNEDNEDSGDEGSIHFGDEDDAGQRKVVRNTRGEIVQQTLFCNREGKIQRNNLKKREPRPETRCGCFALLSLRIDFSSIRWFVKEFNDDHNHDMLEEKYCRMMAAHRKMIESDIMEMNNMRSASFASCCGVDEENRLQHLFWCDGISQLYYQLFGDVLAFDATYGRNKYRCPLVIFSGVNHYKRTTDFGSVVVANETEDTYAWLLEQFKDAMKGKSPTAVITNGDVVMRNAIRKVFPEAHHCLCSWHLLPNATANVGIPGFVKELEKCMFPNVEVAKFCRRWTNMVTKFQLEENNKMNDLLEKKHMGATTYITGQFFVACLCYMRYKEEEDDFACMLGEAVLRTNLQPLERSASRHFTRNIFFIFRKVLFRAAQNFVVGCRESAMWNIYTVKRYQSGGKEWFVSLYPPSEEFKCSCQRMESYGLPCPHIVCVLVYLDYGELPQS. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03870 489 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 487 IPR031052 GO:0006355
Seca7g03870 489 SMART 26again6 457 484 IPR006564 GO:0008270
Seca7g03870 489 Pfam FAR1 DNA-binding domain 75 140 IPR004330 -
Seca7g03870 489 MobiDBLite consensus disorder prediction 8 53 - -
Seca7g03870 489 MobiDBLite consensus disorder prediction 1 70 - -
Seca7g03870 489 ProSiteProfiles Zinc finger SWIM-type profile. 434 482 IPR007527 GO:0008270
Seca7g03870 489 MobiDBLite consensus disorder prediction 54 70 - -
Seca7g03870 489 Coils Coil 9 37 - -
Seca7g03870 489 Pfam MULE transposase domain 202 294 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03870 Seca-Chr7 115666070 115667948 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g03870 MULE 5.7e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03870 - - tpra:123886745 386.726