Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03852 ATGGCCTGTGTCTGTGAGGGAAAGTTAAATGTGAGAAGGCCTCACTTCTATGAGGTTTATTCCTCTGCCTCTAGCTCTGAGAGACTGAAAATTCCAGATGCTTTCATCTGTAGAATGGAGGGCAGGTCGTACGGAATAGTTTTATTAACTGGTCCTAGTGGAAACACATGGCAAGTTCGATTAAGTAAGCAGGACAATGATATATTCTTTCATCATGGATGGCCAACATTTGTGGGAGATCATTGTTTAGAATGTGGTGACCTTTTGGTTTTCAGATATGAGGGTAACTTGCATTTCACTGTGCAAGTATTTGATAAGAATGCATGTGAGAAAGAAGCAGCATTTCATTCTGAATGCAGTCAAAATTCGTGCAACTTTATTAATATTAAAGGACAGCAAAGAGATAGTAAGGAAAATTCTTCTTTGGATGTTGTTGAAGGTGTTCCAAAGAAAATGAGACATAGCACCATTGACAACCAGGAACTTGAGCTGGGAATTGTTGGAAAAGAACTAACAAAGTATGAGGTAGTAAAACCAATTAGCATGTTCAGAGAATCGGAAGAAACCTCCAACACCTTTCACATGGAAAATAACCATGAAGATGAAGACGCAGCCATCCTGTATCGAAGTGGGAAGGAAGATGAGCATTATAATCTTAGTGGAGTTTCACTATCAAAGTTATCATCAGCACATGATGAGAAAAAAGTTGCTCAGTCATTTACTTCGTCTTTTCCATATTTTGTTAGAATAATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGGTGGGTTGTTCACATGTTCTTTTTTTATTCAAATTACAATATCGCGTTTCTCTGAAAAGTATTAACAGTAGTTGTTATCATGGCTTTCTGGCTGTAAAAAACTGTATTGAACAATGTGGTAAACTGGTAGTAATTGACTTTCCTTCTCCTCGCATATTTGTTATTAATATCCCATATCAATTTTCGATGGCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAACTTGAAGGGAGAACACTGGACTGTTAATTCTGTGCCAACCACTAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCTTTTGTTCGTAGCAATAACATAAAGGTTGGAGATATCTGCATTTTTGAACTTATACATGAGTGTGAATTACGCGTTCACATTGCTGGGGTTGGAAGAGATGGGATAGGCTGCCAGGATGAAAAACTAGCTTTTAGTATGCCTAATGCAGGACATGCTGTCACTTGCCATAAGACTTCCGGATATATGCCAATGAATCCTAAAGTCAGCTCAAAATGCATAAGCAAAGTTGATCTTCCAGAGAAGAAGTGGACAAAGGTTGGTCAAGAAGCTGTTTTATCAGCTGATTTAAAGAAATCTGGTAGAGCTTCAAATACTTCCAAGAAGATGGGGGTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTGTTCAGAGGAAACATCGAGTTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTTGATGAAAAAAGAGTGGCTCAAGCTTTTACTTCACCTTTTCCTAGTTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCTGCACATCTCCCCACATACAAAACAGAAGTTATGCTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCAGAACGATTCACACCTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCTCAGTGTGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCAAAATGGGGATGTGTGA 1917 0.3928 MACVCEGKLNVRRPHFYEVYSSASSSERLKIPDAFICRMEGRSYGIVLLTGPSGNTWQVRLSKQDNDIFFHHGWPTFVGDHCLECGDLLVFRYEGNLHFTVQVFDKNACEKEAAFHSECSQNSCNFINIKGQQRDSKENSSLDVVEGVPKKMRHSTIDNQELELGIVGKELTKYEVVKPISMFRESEETSNTFHMENNHEDEDAAILYRSGKEDEHYNLSGVSLSKLSSAHDEKKVAQSFTSSFPYFVRIMKSFNVSGSYTLVGCSHVLFLFKLQYRVSLKSINSSCYHGFLAVKNCIEQCGKLVVIDFPSPRIFVINIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRSNNIKVGDICIFELIHECELRVHIAGVGRDGIGCQDEKLAFSMPNAGHAVTCHKTSGYMPMNPKVSSKCISKVDLPEKKWTKVGQEAVLSADLKKSGRASNTSKKMGVCPQSKAAHKKLAVQRKHRVEDELSSQAKAGLRMLFALDEKRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVMLRNSRGECWTVNSVPDAKGRTIHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGDV. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03852 638 CDD B3_DNA 21 105 IPR003340 GO:0003677
Seca7g03852 638 Pfam B3 DNA binding domain 21 107 IPR003340 GO:0003677
Seca7g03852 638 Pfam B3 DNA binding domain 318 394 IPR003340 GO:0003677
Seca7g03852 638 Pfam B3 DNA binding domain 531 618 IPR003340 GO:0003677
Seca7g03852 638 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Seca7g03852 638 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Seca7g03852 638 Gene3D - 228 397 IPR015300 -
Seca7g03852 638 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 24 398 IPR044837 -
Seca7g03852 638 SMART B3_2 16 107 IPR003340 GO:0003677
Seca7g03852 638 SMART B3_2 531 627 IPR003340 GO:0003677
Seca7g03852 638 SMART B3_2 304 398 IPR003340 GO:0003677
Seca7g03852 638 SUPERFAMILY DNA-binding pseudobarrel domain 312 396 IPR015300 -
Seca7g03852 638 CDD B3_DNA 317 394 IPR003340 GO:0003677
Seca7g03852 638 ProSiteProfiles B3 DNA-binding domain profile. 531 627 IPR003340 GO:0003677
Seca7g03852 638 ProSiteProfiles B3 DNA-binding domain profile. 319 398 IPR003340 GO:0003677
Seca7g03852 638 CDD B3_DNA 529 623 IPR003340 GO:0003677
Seca7g03852 638 Gene3D - 516 626 IPR015300 -
Seca7g03852 638 Gene3D - 8 109 IPR015300 -
Seca7g03852 638 SUPERFAMILY DNA-binding pseudobarrel domain 524 625 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03852 Seca-Chr7 115052851 115056892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03852 13 124 B3 DNA Binding Superfamily AT3G18990 38.938 5.54e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g03852 B3 4.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03852 - - gmx:100814386 928.317