Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03843 ATGGAAGCAATGAATAGGAGCTCATCTTCCACTTCTTCTTCGTATTCTTCCACTTCAGATCAGTCCACCCCACGCAGCAATAATAACAAACCCGTCAGAATCAAAGGCCCATGGAGTGCAGAAGAAGACCGGATCCTGACCCGACTCGTCGAAACCCACGGGCCCCGAAACTGGTCCTTGATTAGCCGTTACATAAAGGGAAGGTCCGGCAAGTCCTGCAGGCTTCGGTGGTGCAATCAGCTAAGTCCCACCGTGGAGCACCGGCCGTTCTCGCCGGAAGAGGACAACATAATCTTGGACGCTCATGCCCGGTTCGGTAATAAATGGGCCACCATTGCCCGGTTATTACCGGGTCGAACCGATAATGCGGTTAAGAATCATTGGAATTCGACCCTCAAGAGGAGGGACCAACGGCGTCGTTTTGTTAACGATTTCGGGGATGCTGCTGCTGTTTCTTCTCCTGGATCTGTGCCGTTCGAGGATGATCCGTTGACCGCGTTGACCCTGGCGCCGCCCGGGAATGGTAACGGTGTCAGAGAGGAGAAAAGGCTTTCGCCGGAGAGTGTGCCGGCGGGGTTTTGGGATGCGATGCGAGGTGTGGTTGCGAGGGAAGTGAGAGAATATATGTCTTCCACGTTTTCTGACAACTTGGGTTCGCATTCAAATGATGATGAATCATAA 681 0.5286 MEAMNRSSSSTSSSYSSTSDQSTPRSNNNKPVRIKGPWSAEEDRILTRLVETHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPEEDNIILDAHARFGNKWATIARLLPGRTDNAVKNHWNSTLKRRDQRRRFVNDFGDAAAVSSPGSVPFEDDPLTALTLAPPGNGNGVREEKRLSPESVPAGFWDAMRGVVAREVREYMSSTFSDNLGSHSNDDES. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03843 226 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Seca7g03843 226 Gene3D - 34 86 - -
Seca7g03843 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Seca7g03843 226 SMART sant 86 134 IPR001005 -
Seca7g03843 226 SMART sant 34 83 IPR001005 -
Seca7g03843 226 Pfam Myb-like DNA-binding domain 38 95 - -
Seca7g03843 226 PANTHER MYB PROTEIN-RELATED 35 179 - -
Seca7g03843 226 FunFam MYB transcription factor 35 86 - -
Seca7g03843 226 FunFam Transcription factor MYB44 89 135 - -
Seca7g03843 226 MobiDBLite consensus disorder prediction 1 36 - -
Seca7g03843 226 CDD SANT 37 79 IPR001005 -
Seca7g03843 226 MobiDBLite consensus disorder prediction 1 33 - -
Seca7g03843 226 Gene3D - 89 135 - -
Seca7g03843 226 SUPERFAMILY Homeodomain-like 33 128 IPR009057 -
Seca7g03843 226 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Seca7g03843 226 CDD SANT 89 132 IPR001005 -
Seca7g03843 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03843 Seca-Chr7 114783440 114784120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03843 33 146 MYB Transcription Factor Family AT4G37260 75.439 4.94e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g03843 Myb_DNA-bind_6 6.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03843 - - zju:107420865 289.271