Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03835 ATGCAACAATCAAACGGTTCTGATTCATCGCAACAGCAACAGCAACACTCGTCGGAGCAGAACAAACAACAACGCCAACCGCCGCCGCCGCCGCAGGCTCAGCCAGTGGCGGTGCCGCCTCAGTGGGTGCCGATGCAGTATCCGGTGGTAATGCCGCACCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCTTACGTGCCTTACCACCACCAGTATCAGCAGCTACCACCGCACGTGCCACATCAGCATCAGCATCAACACCAGCATGGATCCAACGGCGAGAACAAGACTATTTGGGTCGGTGATTTGCATCACTGGATGGACGAGAATTATCTCCATCGCTGCTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGCCACGGCTGAGAAAGTTTTGCAGAATTATGCTGGAATGATGATGCCCAACACAGAGCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACGGGAGACAAGAATTCAGATAATGCTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACTGATAGTTTGTTGCATGAAACTTTTGCTAGTAAATACCCTTCTGTTAAAGCTGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGATCCCAGGCCATGACTCATATGAATGGTGTTTACTGTTCTAGCAGACCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAGGAGGCCAGTCAAATGGCACATCCGGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTCACAGATGAAGATCTTAGGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCCGTAGGTAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGGAGAAGCTAAATGGTACAATGATTGGCAAGCAAACAATTCGTCTTTCTTGGGGCCGCAATCCTGCAAATAAGCAGTTTAGAATGGATTTTGGCAGCCCCTGGAGTGGGGCATATTATGGTGGCCCTATTTATGATGGTTATGGATATGCAATGCCGCCTCCTAATGACCCAAGCATGTATGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGCCACCAACAGCAAGTAAACTGA 1278 0.4765 MQQSNGSDSSQQQQQHSSEQNKQQRQPPPPPQAQPVAVPPQWVPMQYPVVMPHHMLPPQHYAPPPYVPYHHQYQQLPPHVPHQHQHQHQHGSNGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGMMMPNTEQPFRLNWATFSTGDKNSDNAPDLSIFVGDLAADVTDSLLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTHMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSGQSEADSTNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALEKLNGTMIGKQTIRLSWGRNPANKQFRMDFGSPWSGAYYGGPIYDGYGYAMPPPNDPSMYAAAYGAYPVYGGHQQQVN. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03835 425 Gene3D - 286 397 IPR012677 -
Seca7g03835 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Seca7g03835 425 MobiDBLite consensus disorder prediction 270 301 - -
Seca7g03835 425 FunFam Polyadenylate-binding protein RBP47 280 397 - -
Seca7g03835 425 SUPERFAMILY RNA-binding domain, RBD 61 178 IPR035979 GO:0003676
Seca7g03835 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Seca7g03835 425 FunFam Polyadenylate-binding protein RBP47C isoform A 189 265 - -
Seca7g03835 425 Gene3D - 96 176 IPR012677 -
Seca7g03835 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Seca7g03835 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Seca7g03835 425 Gene3D - 178 285 IPR012677 -
Seca7g03835 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 86 371 - -
Seca7g03835 425 FunFam Polyadenylate-binding protein RBP47C isoform A 96 176 - -
Seca7g03835 425 SUPERFAMILY RNA-binding domain, RBD 189 364 IPR035979 GO:0003676
Seca7g03835 425 MobiDBLite consensus disorder prediction 1 38 - -
Seca7g03835 425 CDD RRM2_SECp43_like 189 268 - -
Seca7g03835 425 CDD RRM1_SECp43_like 98 178 - -
Seca7g03835 425 MobiDBLite consensus disorder prediction 265 302 - -
Seca7g03835 425 MobiDBLite consensus disorder prediction 1 23 - -
Seca7g03835 425 MobiDBLite consensus disorder prediction 24 38 - -
Seca7g03835 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Seca7g03835 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Seca7g03835 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Seca7g03835 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Seca7g03835 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Seca7g03835 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 361 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03835 Seca-Chr7 114585712 114590219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03835 66 375 Eukaryotic Initiation Factors Gene Family AT4G34110 27.302 3.07e-32 127