LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g03750	ATGGACGGTTACGATGGGACCGTGAGGCTTGGTGCTATTAACTTGAAGCATGATCGCGGTGATTTTGACTCCGGTCCCGATGTATCGGTTTCCTCTCCGGTTACCAGACAGAAAGCCGCTGCTGCTAAGCAATTCATCGAGAATCATTACAAGAATTATCTCCAAGGATTGCAGGATCGCAAAGATAGACGCCGAGCACTTCAAAGGAAAGTGCAGGAATCTCAAATACCAGCTGAAGAGCAAGAGGAGATGATGAGGAATTTGGAGCGCCGAGAAACTGAATACATGAGGCTTCAGAGACGTAAAATTGGAATTGACGATTTCGAGCAATTAACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAGGTACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGACAGGTGGAACATGTAAGATCCGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTTTATCTCATCATGGAATATTTACCTGGTGGTGACATCATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATCCACTCAATACATCAACACAACTATGTACATAGGGATATAAAACCAGATAACCTGATTTTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTTGATGATAAGTATTCAAACATTCTATTGGAAAATGAAGATTTTAGCGGTCAAGAATCAACTGGTGAAACTGAAGGATATTCTACCTCCCCTTGGTTGATGCCAAAGGAACTATTACAACAGTGGAAACGTAATCGCCGCGCATTGGCATATTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGACGATCCAAGGATGACCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCGGAAGAACCCAAAATATCAGTTGAAGCTAAGGATCTGATCTGTCGCTTACTATGTGATGTTGACTCAAGACTAGGAACCAGAGGAGTAGAAGAAATAAAGGCTCATCCATGGTTCAAGAGTATTCAGTGGGACATGCTTTATGAATTGGAAGCTGCATATAAACCTACAGTCACTGGAGACTTGGACACGCAAAACTTTGAGAAGTTTCCTGATGTGGACGGCCCACCATCCTCAACAGCAAGTGTGGGACCTTGGCGAAAGGTAATTATCTTTTTAAGCTTTTAA	1395	0.4194	MDGYDGTVRLGAINLKHDRGDFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPAEEQEEMMRNLERRETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSNILLENEDFSGQESTGETEGYSTSPWLMPKELLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMTCRKIVNWKTCLKFPEEPKISVEAKDLICRLLCDVDSRLGTRGVEEIKAHPWFKSIQWDMLYELEAAYKPTVTGDLDTQNFEKFPDVDGPPSSTASVGPWRKVIIFLSF.	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g03750	464	CDD	STKc_NDR_like	106	459	-	-
	Seca7g03750	464	CDD	MobB_NDR_LATS-like	42	103	-	-
	Seca7g03750	464	PANTHER	SERINE/THREONINE-PROTEIN KINASE	32	437	-	-
	Seca7g03750	464	FunFam	Non-specific serine/threonine protein kinase	192	259	-	-
	Seca7g03750	464	SUPERFAMILY	Protein kinase-like (PK-like)	83	453	IPR011009	-
	Seca7g03750	464	ProSiteProfiles	Protein kinase domain profile.	108	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g03750	464	Gene3D	Phosphorylase Kinase; domain 1	105	437	-	-
	Seca7g03750	464	ProSiteProfiles	AGC-kinase C-terminal domain profile.	409	464	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Seca7g03750	464	FunFam	Non-specific serine/threonine protein kinase	79	191	-	-
	Seca7g03750	464	Coils	Coil	78	101	-	-
	Seca7g03750	464	FunFam	Non-specific serine/threonine protein kinase	307	426	-	-
	Seca7g03750	464	ProSitePatterns	Protein kinases ATP-binding region signature.	114	137	IPR017441	GO:0005524
	Seca7g03750	464	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Seca7g03750	464	SMART	serkin_6	108	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g03750	464	Gene3D	Transferase(Phosphotransferase) domain 1	192	426	-	-
	Seca7g03750	464	Pfam	Protein kinase domain	108	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g03750	Seca-Chr7	112834990	112843258	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g03750	1	459	AGC Kinase Gene Family	AT5G09890	80.043	0.0	770

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Seca7g03750		Pkinase	1.5e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g03750	K08790		-	gmx:100781770	884.789