Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03745 ATGGACGGGTTTAACCCATCCCTTTCGTTGGATGATGAAATCGACACGATGTTAATGAGGATGCAGAATCTCCCTGAAATCTCTGCACCTCACGGCAACGGCACGGTGGCGAGTTTTCAACCACCAGAGTTCTCTGCCGCAAATACCATGCAATTTGCAAATTCGATTAACAACCTTCAAATTCCTATGTCTTGGTCTTCATTCACTCACACGCCTGCATCAACCTCAATCTCTTTCGCTAATAACACTGCTATGATGAATTCATCCAACGGTGAGGCATCATCTGGTGCAAACGGTTATTCAGGGAAACGTAATTCGATGGCGGCGATGAGGGAGATGATATTCAGGATAGCATCCATGCAACCGATTCATATTGATTATGAATCCGTGAAGGCACCGAAGCGGAGGAACGTGAAGATTTCGAAGGATCCTCAGAGTGTGGCGGCTAGGCACAGGAGAGAAAGGATCAGTGAGAGGATAAGGATACTGCAGAGAATGGTCCCTGGAGGGACTAAGATGGACACTGCTTCTATGTTAGATGAAGCCATTCACTACCTCAAGTTTCTCAAGACACAGGTTCAATCACTTGAACGAGTTGCTGCTGCTAATAACAGGATTAATGGATTCCCTGTGTCTGTGTCCAGTGAAAGTGCTGGTACTAGCACCACCAACACTCCTTATCTTCCCCTTCCAAAGCCTTACCAAGATTCTCAAATTCAAGGTGTTCATCACCATTTCAAAGATGAATAA 750 0.4547 MDGFNPSLSLDDEIDTMLMRMQNLPEISAPHGNGTVASFQPPEFSAANTMQFANSINNLQIPMSWSSFTHTPASTSISFANNTAMMNSSNGEASSGANGYSGKRNSMAAMREMIFRIASMQPIHIDYESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRMVPGGTKMDTASMLDEAIHYLKFLKTQVQSLERVAAANNRINGFPVSVSSESAGTSTTNTPYLPLPKPYQDSQIQGVHHHFKDE. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03745 249 Pfam Helix-loop-helix DNA-binding domain 149 189 IPR011598 GO:0046983
Seca7g03745 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Seca7g03745 249 MobiDBLite consensus disorder prediction 230 249 - -
Seca7g03745 249 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 229 IPR045843 GO:0003700|GO:0006355
Seca7g03745 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 204 IPR036638 GO:0046983
Seca7g03745 249 Gene3D - 139 207 IPR036638 GO:0046983
Seca7g03745 249 SMART finulus 146 195 IPR011598 GO:0046983
Seca7g03745 249 FunFam BHLH transcription factor 143 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03745 Seca-Chr7 112734460 112735209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03745 44 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 60.000 2.18e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g03745 HLH 7.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03745 - - gmx:100815041 241.891