Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03743 ATGGCTCTTCTGCTAGACAATTGTGAAGGCATTTTACTCTCATTAGACACTCACAAATCAGTGCCAGCACCATTCCTCACAAAAACATACCAACTGGTAGATGATCCCACCACCGATCACATAGTCTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGGGACCTTCTCCCTAACTATTTCAAACACAACAATTTCTCAAGCTTCGTTCGCCAACTCAACACCTATGTAGGTTTCAGAAAGATTGTGCCTGATAGATGGGAATTTGCAAATGAATTCTTCAAGAGGGGAGAGAAGCACTTGTTATGTGAGATCCATAGAAGAAAAACTGCTCAACCTCAACAAGTAGCCATGAATCATCATACTCAACTTGGACTCAATGCTCCTAACTTTTTCCCCTTTCATCATAACAGACTCAGCATTTCTCCTTCAAATGACTCTGATGAGTTAGCCAATTGGTGTGACTCACCACCACTCACTTCACCAAGTGGAGCCTCTGCTGTTAACGGAAGCAACTTCAACGCCGTCACCGTCACAGCGCTTTCTGAGGACAATGAAAGACTCAGAAGAAGCAATAACATGCTAATGTCTGAGCTAGCACACATGAAGAAGCTTTACAATGACATAATCTACTTCGTTCAAAATCATGTCAAACCTGTGGCTCCAAGCAACAATTACCCTTCTTTCTTACTCTGCAATACACCACCACCGATGAATAACAACCAGGTTATGGGGTATCATCATTCAAGTTCAACTAACACGAAGCAAGCGCAAGCACATGGTATGAACTCTCCAACGAACACATCAAGAAGCTCCATAACGATGGTTGAACAGCCTAACAGCACTTGCAGGACTAAGCTTTTTGGGGTTTCTCTTCAGTCTAAGAAAAGGGTGCATCCTGAGTATGGATCTAATTTCATGGATTCAGAAATGAATAAGGCTCGTTTGGTTTTGGAAAATGAGGACTTAGGCTTGAATCTCATGCCTCCTTCAACTTGTTAG 1023 0.433 MALLLDNCEGILLSLDTHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYVGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTAQPQQVAMNHHTQLGLNAPNFFPFHHNRLSISPSNDSDELANWCDSPPLTSPSGASAVNGSNFNAVTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNYPSFLLCNTPPPMNNNQVMGYHHSSSTNTKQAQAHGMNSPTNTSRSSITMVEQPNSTCRTKLFGVSLQSKKRVHPEYGSNFMDSEMNKARLVLENEDLGLNLMPPSTC. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03743 340 SMART hsfneu3 21 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g03743 340 Gene3D - 17 117 IPR036388 -
Seca7g03743 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 284 IPR027725 -
Seca7g03743 340 Pfam HSF-type DNA-binding 25 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g03743 340 SUPERFAMILY "Winged helix" DNA-binding domain 22 115 IPR036390 -
Seca7g03743 340 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g03743 340 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g03743 340 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g03743 340 FunFam Heat stress transcription factor B-4 17 116 - -
Seca7g03743 340 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03743 Seca-Chr7 112723932 112725100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03743 1 339 HSF AT1G46264 57.297 2.01e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca7g03743 HSF_DNA-bind 3.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03743 K09419 - gmx:100781389 517.309