Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03739 ATGGCTGGCTCTGGTACTGGTACGCACCACCCAACAACACAACCATCTTCATCTTTTGCCAGAGCCATGCCTCCTGATTCCGAAGAATTCTCCACCTTGTTCAACCAACTCCTCCACAATAACTCTCCCCCACCACCACCAATGGATCCGAACCATTCCGGGTCGGACTTCACCTCGACCCACCCGGTTGCTCCTTCTCCTTCTACTTTCAATTTCTCTGATCCTTATGCTGATGCTTCCATCCCTCACCCTCATGCCAGCACCTCCTTCAAACAACACACCCTTGAGGATAATGCTGAGACTTCAGAGTTGCCATCAAAGTCTGCCCCACCACCACGTTCTTCCTCAAAAAGGAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAATGCTTGTGA 531 0.4689 MAGSGTGTHHPTTQPSSSFARAMPPDSEEFSTLFNQLLHNNSPPPPPMDPNHSGSDFTSTHPVAPSPSTFNFSDPYADASIPHPHASTSFKQHTLEDNAETSELPSKSAPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQCL. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03739 176 MobiDBLite consensus disorder prediction 118 132 - -
Seca7g03739 176 MobiDBLite consensus disorder prediction 52 75 - -
Seca7g03739 176 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
Seca7g03739 176 FunFam Basic helix-loop-helix transcription factor 115 176 - -
Seca7g03739 176 CDD bHLH_AtPIF_like 120 174 IPR047265 -
Seca7g03739 176 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g03739 176 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 23 175 IPR031066 -
Seca7g03739 176 MobiDBLite consensus disorder prediction 1 132 - -
Seca7g03739 176 MobiDBLite consensus disorder prediction 85 115 - -
Seca7g03739 176 Gene3D - 115 175 IPR036638 GO:0046983
Seca7g03739 176 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Seca7g03739 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 175 IPR036638 GO:0046983
Seca7g03739 176 SMART finulus 126 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03739 Seca-Chr7 112685242 112687265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03739 119 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 93.103 4.84e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g03739 HLH 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03739 - - gmx:100785332 167.548