Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03732 ATGGCGCAGATTCAGGTGCAGCATCAAACTCCTGTGGCCGTGTCGGCTCCTTCGAACGGTGTGGCTCCCGCTCCGAACGCGAACCAATTCGTGACGACGTCGTTGTACGTTGGGGATCTTGACCAGAATGTCAACGATTCGCAGCTCTACGATCTGTTCAACCAGGTTGGCCAAGTCGTTTCTGTTCGGGTCTGCAGGGACTTGACCACCCGTCGCTCACTCGGTTACGGCTATGTTAATTACAGTAACCCTCAGGATGGTTATCTAGAATGTTCTCTAACATGTGGGTTTGTTGTATCCTCAGCGGCAAGGGCATTGGATGTGCTAAATTTCACTCCACTGAACAACAAATCTATTAGGATCATGTATTCTCATCGGGATCCTAGTATTCGGAAGAGTGGTACTGCAAATATTTTTATCAAGAATTTGGATAAGGCAATTGATCACAAAGCTTTACATGATACTTTTTCTTCTTTTGGAAATATTCTTTCTTGCAAAATAGCGACTGATGGCTCTGGCCAGTCTAAAGGCTATGGTTTTGTTCAATTCGACAATGAGGAATCTGCACAGAATGCGATTGACAAGTTGAATGGCATGCTGATCAATGATAAGCAGGTCTATGTAGGTCAATTCCTGCGAAAGCAAGATAGAGAGATTGTTCTTAATAAGACAAAATTCAATAATGTCTATGTGAAAAACCTAACGGATTCAATCACAGACGATGACTTAAAGAAAACTTTTGGAGAATATGGGACCATTACTAGTGCTGTTGTAATGAGAGACGCAGATGGTAAATCAAAGTGTTTTGGTTTTGTCAATTTTGAAAACCCAGATGATGCTGCTAAAGCTGTTGAGGCACTGAATGGGAAAAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCAAAAAAAATCTGAACGAGAGCATGAACTGAAAGGACGATTTGAGCAGAGTATAAAGGAAGCTGTTGACAAATATCAAGGCGTGAACTTATATCTCAAGAACTTGGATGATTCCATTGCTGATGAAAAACTTAAAGAACTGTTCTCTGAGTTTGGTACAATAACCTCATGCAAGATTATGCGAGACCCAAGTGGAATCAGTAGAGGATCAGGGTTTGTTGCATTTTCAACTCCCGAGGAAGCATCACGAGCTCTTGGGGAGATGAATGGTAGAATGATTGCTGGCAAACCTCTGTATGTTGCCCTTGCACAGAGAAAAGAAGAGAGAAGGGCAAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCAATTGCACCTAATGTTGCACCCCGAATGCCACTCTACCCTCCTGGTGCTCCCGGTCTAGGACAACAATTTTTGTATGGTCAAGGACCCCCAGCAATGATTCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTCGTTCCTGGGATGAGGCCTGGTGGTGCTCCACTGCCAAGCTTCTTTGTACCAATGGTTCAGCAGGCCCAACAAGGCCAGCGCCCAGCAGGACGCCGAGGAGCAGGTCCTGTACAACAACCCCAGCAGCCAGTGCCATTGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTATCGCTACCCTCCTGGACGCAACATGCAAGATGTCCCACTGCCAGGGGTAGCTGGAGGAATGCTCTCAGTCCCTTATGACATGGGTGGTCTGCCAATCCGGGATGCTGTGGGACAGCCAATGCCTATTCAGGCTTTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAACAGAGGACTATGCTTGGTGAAGCTTTATACCCGCTAGTAGATCAACTGGAACATGATGCAGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAACCTGAAGTATTGCATTTGATTGAGTCACCAGATGCTCTCAAGGCAAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTACTCCACAGCCAGCCCCAGCCGATCAACTTGCCTCACTCTCTCTTAATGACAGTCTTGTGTCTTAG 2001 0.4603 MAQIQVQHQTPVAVSAPSNGVAPAPNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDGYLECSLTCGFVVSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQDREIVLNKTKFNNVYVKNLTDSITDDDLKKTFGEYGTITSAVVMRDADGKSKCFGFVNFENPDDAAKAVEALNGKKFDDKEWYVGKAQKKSEREHELKGRFEQSIKEAVDKYQGVNLYLKNLDDSIADEKLKELFSEFGTITSCKIMRDPSGISRGSGFVAFSTPEEASRALGEMNGRMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAIAPNVAPRMPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPLPSFFVPMVQQAQQGQRPAGRRGAGPVQQPQQPVPLMQQQMLPRGRVYRYPPGRNMQDVPLPGVAGGMLSVPYDMGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVTPQPAPADQLASLSLNDSLVS. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03732 666 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 570 647 IPR002004 GO:0003723
Seca7g03732 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 208 IPR000504 GO:0003723
Seca7g03732 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 407 IPR000504 GO:0003723
Seca7g03732 666 SMART rrm1_1 228 300 IPR000504 GO:0003723
Seca7g03732 666 SMART rrm1_1 331 403 IPR000504 GO:0003723
Seca7g03732 666 SMART rrm1_1 34 122 IPR000504 GO:0003723
Seca7g03732 666 SMART rrm1_1 137 209 IPR000504 GO:0003723
Seca7g03732 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 126 IPR000504 GO:0003723
Seca7g03732 666 Gene3D - 1 129 IPR012677 -
Seca7g03732 666 Gene3D - 218 315 IPR012677 -
Seca7g03732 666 FunFam Polyadenylate-binding protein 20 136 - -
Seca7g03732 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 304 IPR000504 GO:0003723
Seca7g03732 666 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 643 IPR006515 GO:0003723
Seca7g03732 666 Gene3D - 316 416 IPR012677 -
Seca7g03732 666 FunFam Polyadenylate-binding protein 217 312 - -
Seca7g03732 666 SMART poly_2 582 645 IPR002004 GO:0003723
Seca7g03732 666 FunFam Polyadenylate-binding protein 566 648 - -
Seca7g03732 666 SUPERFAMILY RNA-binding domain, RBD 227 411 IPR035979 GO:0003676
Seca7g03732 666 Pfam Poly-adenylate binding protein, unique domain 578 642 IPR002004 GO:0003723
Seca7g03732 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 206 IPR000504 GO:0003723
Seca7g03732 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 297 IPR000504 GO:0003723
Seca7g03732 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 400 IPR000504 GO:0003723
Seca7g03732 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 85 IPR000504 GO:0003723
Seca7g03732 666 CDD RRM3_I_PABPs 226 305 - -
Seca7g03732 666 CDD RRM4_I_PABPs 329 407 - -
Seca7g03732 666 Gene3D - 130 217 IPR012677 -
Seca7g03732 666 FunFam Polyadenylate-binding protein 313 418 - -
Seca7g03732 666 SUPERFAMILY PABC (PABP) domain 512 651 IPR036053 GO:0003723
Seca7g03732 666 MobiDBLite consensus disorder prediction 492 512 - -
Seca7g03732 666 Gene3D - 566 646 - -
Seca7g03732 666 SMART rrm2_1 137 209 IPR003954 GO:0003676
Seca7g03732 666 SMART rrm2_1 228 300 IPR003954 GO:0003676
Seca7g03732 666 SMART rrm2_1 331 403 IPR003954 GO:0003676
Seca7g03732 666 CDD RRM2_I_PABPs 134 209 IPR045305 -
Seca7g03732 666 PANTHER RNA BINDING PROTEIN 32 86 - -
Seca7g03732 666 SUPERFAMILY RNA-binding domain, RBD 33 215 IPR035979 GO:0003676
Seca7g03732 666 FunFam Polyadenylate-binding protein 137 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03732 Seca-Chr7 112584825 112592077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03732 1 661 Eukaryotic Initiation Factors Gene Family AT4G34110 67.016 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03732 K13126 - gmx:100784442 1124