Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03720 ATGGAAGAAAGGGATTATTGCTGTTCCACGAATACTTCAACTATCGAAAGATGCAGAAGCAACAGCCCAAAAGAGAAGACGAAGCGGCAAGAGAAACCGATGAAACCATACAGAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTAGCAGAAATCAGAGAACCAAACAAGAGGTCAAGGATTTGGTTGGGATCTTACATCACTCCGGTGGCCGCCGCACGCGCCTACGACACGGCGGTGTTTTACCTGAGAGGCCCTTCTGCACGCCTCAACTTCCCTGAATTGTTGTTCCAAGACCAAGAAGCTGATCACGATTCCATCGTCCAACAAGGGAACATGTCTGCTGATTCCATACGCAAAAAAGCCACACAAGTTGGTGCTAGAGTTGATGCTCTCCAAACAGCTCTTCATGCTTCTTCCACTTCTCAGAAACCTGACTTGAATGAGTTTCCAAATCCAGAAGATTCCCTTGACCTTCAGGATTGA 486 0.4753 MEERDYCCSTNTSTIERCRSNSPKEKTKRQEKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPVAAARAYDTAVFYLRGPSARLNFPELLFQDQEADHDSIVQQGNMSADSIRKKATQVGARVDALQTALHASSTSQKPDLNEFPNPEDSLDLQD. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03720 161 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Seca7g03720 161 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Seca7g03720 161 MobiDBLite consensus disorder prediction 137 161 - -
Seca7g03720 161 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Seca7g03720 161 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Seca7g03720 161 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Seca7g03720 161 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Seca7g03720 161 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Seca7g03720 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 19 156 - -
Seca7g03720 161 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Seca7g03720 161 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03720 Seca-Chr7 112372917 112373402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03720 17 145 AP2-EREBP Transcription Factor Family AT1G46768 61.240 1.54e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g03720 AP2 9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03720 K09286 - gmx:547642 220.32