Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03719 ATGAATTCTCTGTGCTTCCACAACGCAAATGCAATACACACTCTCCATTTCCACTCCCACCCAACCCCTTCTTTTCTTTTCCTCAACACACACTCCTCAAGACCCCGCTTCCGATGCTGCTCCATCGAGATCGACATGGTGAAGGACAAGCAAGGCACCTACGCCCCTAAACAAAACAAAGTCGTCGTCCTTTGGGACCTCGATAACAAACCCCCACGTGGCCCACCCTACAACGCCGCTCTCTCCCTCAAAACCCTCGCTCAACACTTCGGCGACGTCGTCGACATCTCCGCCTACGCCAACCGCCACGCCTTCATCCATCTCCCTCAATGGGTCCTCGACCAACGCCGTGAACGCAAAAACCTCGACATCCTCGAGCGCAAGGGCGTCGTCACACCTTCCGAGCCTTACGTCTGCAACGTCTGTGGCCGCAAATGCAAGACCAACTTCGACCTCAAGAAGCACTTCAAGCAGCTTCACCAGCGCGAGCGTCAGAAGAAGTTGAACCGCTTGAATTCTCTTAAGGGGAAGAAGCGACAGCGCTATAAGGAGAGGTTCATTAGTGGGAACCATAAGTACAATGAGGCTGCTAGGGCTCTTGTTACGCCTAAGGTTGGGTATGGTCTTGCTTCGGAGTTGCGGCGTGCTGGGGTTTTTGTGAAGACAGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCGTTGAAGAGGCAGATGCGGCACTCGATGAGTAGAGGGGTTGATTGGTTGTTTCTGGTTTCGGATGATTCGGATTTCTCCGAGATGTTGAGGAGGGCGAGGGAGGCCAATTTGGGGACTGTGGTTGTTGGGGATATGGATAGGGCGTTGGGGCGGCATGCTGATTTGTGGGTTCCTTGGCTTGCGGTTGAGAATGGAGATATTTCGGAGAAAGATTTGGTGCCCAAGAACAGAGGGAGGAGAACAACAGAGGATTTGGATGGGTTGTTTTTTAATGAGGCTGAGGAATTGGAAGAGGATTTTTTGTTAGTGTATAGCGAGGATGAGGATGAGGAATACACTGAACAAGAAGAAGAAGATGGGTTTTATATTTATTGA 1074 0.5149 MNSLCFHNANAIHTLHFHSHPTPSFLFLNTHSSRPRFRCCSIEIDMVKDKQGTYAPKQNKVVVLWDLDNKPPRGPPYNAALSLKTLAQHFGDVVDISAYANRHAFIHLPQWVLDQRRERKNLDILERKGVVTPSEPYVCNVCGRKCKTNFDLKKHFKQLHQRERQKKLNRLNSLKGKKRQRYKERFISGNHKYNEAARALVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMRHSMSRGVDWLFLVSDDSDFSEMLRRAREANLGTVVVGDMDRALGRHADLWVPWLAVENGDISEKDLVPKNRGRRTTEDLDGLFFNEAEELEEDFLLVYSEDEDEEYTEQEEEDGFYIY. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03719 357 CDD PIN_LabA-like 147 277 - -
Seca7g03719 357 Gene3D - 53 293 - -
Seca7g03719 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 165 IPR013087 -
Seca7g03719 357 Coils Coil 157 177 - -
Seca7g03719 357 ProSitePatterns Zinc finger C2H2 type domain signature. 139 160 IPR013087 -
Seca7g03719 357 SUPERFAMILY beta-beta-alpha zinc fingers 130 165 IPR036236 -
Seca7g03719 357 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 38 337 - -
Seca7g03719 357 SMART c2h2final6 137 160 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03719 Seca-Chr7 112337255 112338328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03719 1 354 C2H2 Transcription Factor Family AT5G52010 63.003 7.56e-168 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g03719 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03719 - - pvu:PHAVU_001G023900g 508.834