Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03680 ATGGCTGACCAAGAGAACTGCATGCCCCGCCCTCAGCGCGCAGCCAAGAAGAGGGCCGCCGCTGCAATATGCGAAATGCGCAAGAAGAAGAGGGTCGCGTTGGGCGAGCTCACCAACTTGTCCACCGTCGTTTCCCCTCCGGAGAAACCCTCTTCGGAGGTTCACAAGGAGAAACGGAGAAAGGTCGGAAAACCAAAGCCGACGGCGGCGGCGGCGGAGAAGTTGGATGATGCTCAAACGTGTGGGCCATACGTTTCTGACATTTACGAGTATCTTCGCGGGATGGAGGTGGATCCTAGTAGAAGACCTTTACCTGATTATGTTCACAAAGTTCAGAAGGATGTTAATGCAAATATGAGGGGTGTTCTGGTGGATTGGTTGGTGGAGGTTGCCGAGGAATACAAGCTTGTTTCAGACACGCTTTATTTCTCTGTTTCTTACATAGATAGGTATCTGTCTTTGAATGCTCTATCTAGACAGAAGCTGCAATTACTGGGTGTTTCTTCAATGCTGATTGCTTCAAAATACGAGGAGATCAAGCCACCTGAGGTGGAGGACTTTTGTTACATTACGGACAACACATACTCCAAGGAAGAGGTTGTGGCCATGGAGGCTGATATATTGAAGTCCTTGAACTTCGAATTGGGCGGTCCTACTGTAAAGACATTTCTAAGCTGTGTTTGCAGAAGATTCTCTAGGGTGGCTCAAGAGAGTGTTGATGCTTCGGATTTGCAATTTGAGTTTCTTACCTACTACCTGGCCGAGCTCAGTTTGTTGGATTATAATTGCGTGAAGTTCTTGCCTTCTTTGGTCGCTGCATCTGTTGCGTTTCTAGCTCGATTTATGCTAAGCCCAAAGACACATCCTTGGAATTCAGCCCTCCATCTGCTCACCAGATATGAACCTGCTGAGTTGAAGGAGTGTGTTCTAAACATACATGATTTGTACCTCAGTAGGAGAGGGGGTTCTTTGCTGGCTGTGAGAGAGAAATACAAACAACATAAGTTCAAATGTGTAGCAACAACACCCTCTCCTCCCGAGATACCGCTTTCTCTTTTTGAATTTAGAGGGACGGATATTTAG 1083 0.4709 MADQENCMPRPQRAAKKRAAAAICEMRKKKRVALGELTNLSTVVSPPEKPSSEVHKEKRRKVGKPKPTAAAAEKLDDAQTCGPYVSDIYEYLRGMEVDPSRRPLPDYVHKVQKDVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRYLSLNALSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVAMEADILKSLNFELGGPTVKTFLSCVCRRFSRVAQESVDASDLQFEFLTYYLAELSLLDYNCVKFLPSLVAASVAFLARFMLSPKTHPWNSALHLLTRYEPAELKECVLNIHDLYLSRRGGSLLAVREKYKQHKFKCVATTPSPPEIPLSLFEFRGTDI. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03680 360 CDD CYCLIN_AtCycA-like_rpt2 218 336 - -
Seca7g03680 360 PANTHER CYCLINS 59 339 IPR039361 -
Seca7g03680 360 SMART Cyclin_C_2 218 345 IPR004367 -
Seca7g03680 360 ProSitePatterns Cyclins signature. 120 151 IPR006671 -
Seca7g03680 360 Gene3D - 103 216 - -
Seca7g03680 360 MobiDBLite consensus disorder prediction 40 72 - -
Seca7g03680 360 MobiDBLite consensus disorder prediction 50 71 - -
Seca7g03680 360 SUPERFAMILY Cyclin-like 218 347 IPR036915 -
Seca7g03680 360 Pfam Cyclin, N-terminal domain 87 215 IPR006671 -
Seca7g03680 360 SUPERFAMILY Cyclin-like 76 215 IPR036915 -
Seca7g03680 360 FunFam Cyclin A1 205 341 - -
Seca7g03680 360 FunFam Mitotic cyclin 6 103 203 - -
Seca7g03680 360 SMART cyclin_7 125 209 IPR013763 -
Seca7g03680 360 SMART cyclin_7 222 314 IPR013763 -
Seca7g03680 360 Pfam Cyclin, C-terminal domain 218 344 IPR004367 -
Seca7g03680 360 PIRSF Cyclin_A_B_D_E 2 351 IPR046965 GO:0016538|GO:0044772
Seca7g03680 360 Gene3D - 87 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03680 Seca-Chr7 111011788 111014655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03680 1 354 Core Cell Cycle Gene Families AT5G43080 61.602 4.03e-150 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03680 K06627 - gmx:100791691 535.028