Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03664 ATGGCTCTCGAAGCTCTCAACTCACCCACCACAACTGCCCCATCCTTCCCCTTTGACGAACCAAGCCTCCGATACCCAGAGCCATGGGCAAAACGAAAGCGTTCCAAGCGTCCTCGTTTGGACCACCCTTCATGCACCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCGATTCCAACCGCCAAGGCTCTATTGATTCCCGAACCACTCCAATAGAGTCAAAGCCACAACCGGCCACCGATCCAGCCGGTTCCGTCAAGCTAAGCTACAAATGTTCTGTGTGCAACAAGGCTTTCCCATCTTACCAAGCACTCGGTGGACACAAGGCCAGTCACCGGAAACTCTCTGCCGCCGGTGAAGATCAATCAACCTCCTCAGCCGCCACCACCAGTTCTGCTAACACCGCCGCCGCTTCCAGCGGCGGAGTCAGGACCCACGAGTGTTCCATCTGCCATAAATGTTTCCCCACCGGACAGGCCTTGGGCGGACACAAACGCTGCCACTACGAAGGTGGTGGTGGTGGTAGCAGCAGCGCTGTCACCGCCTCTGAAGGTGTTGGCTCCACCCACACCGTCAGCCATAGCCACCGCGATTTCGATCTCAACATCCCTGCTTTTCCAGAGTTTTCTACCAAGGTGGGAGAAGACGAGGTTGAGAGTCCTCACCCTGTGATGAAGATGAAGAAGCCCCGTGTTTTCGTCATACCAAAGATCGAAATCCCTCAGCTCCAGTGA 756 0.5635 MALEALNSPTTTAPSFPFDEPSLRYPEPWAKRKRSKRPRLDHPSCTEEEYLALCLIMLARGGTTDSNRQGSIDSRTTPIESKPQPATDPAGSVKLSYKCSVCNKAFPSYQALGGHKASHRKLSAAGEDQSTSSAATTSSANTAAASSGGVRTHECSICHKCFPTGQALGGHKRCHYEGGGGGSSSAVTASEGVGSTHTVSHSHRDFDLNIPAFPEFSTKVGEDEVESPHPVMKMKKPRVFVIPKIEIPQLQ. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03664 251 MobiDBLite consensus disorder prediction 1 17 - -
Seca7g03664 251 SUPERFAMILY beta-beta-alpha zinc fingers 97 175 IPR036236 -
Seca7g03664 251 MobiDBLite consensus disorder prediction 63 83 - -
Seca7g03664 251 Pfam C2H2-type zinc finger 153 176 - -
Seca7g03664 251 Pfam C2H2-type zinc finger 97 121 - -
Seca7g03664 251 MobiDBLite consensus disorder prediction 63 92 - -
Seca7g03664 251 MobiDBLite consensus disorder prediction 1 41 - -
Seca7g03664 251 MobiDBLite consensus disorder prediction 124 142 - -
Seca7g03664 251 Gene3D Classic Zinc Finger 95 175 - -
Seca7g03664 251 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 214 IPR044653 GO:0003700
Seca7g03664 251 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Seca7g03664 251 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Seca7g03664 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Seca7g03664 251 SMART c2h2final6 97 119 IPR013087 -
Seca7g03664 251 SMART c2h2final6 153 175 IPR013087 -
Seca7g03664 251 MobiDBLite consensus disorder prediction 120 142 - -
Seca7g03664 251 MobiDBLite consensus disorder prediction 183 197 - -
Seca7g03664 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 175 IPR013087 -
Seca7g03664 251 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03664 Seca-Chr7 110468640 110469395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03664 1 247 C2H2 Transcription Factor Family AT1G27730 52.734 5.55e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g03664 zf-C2H2_6 3.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03664 - - gmx:547886 328.176