Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03653 ATGGAATCTGTAGGAGCCTTCTTCCCTGATTCAGAATGGGATTGCTTTCGCAGAATGTTTGCCAATGAGGAGCATGATTACTACTCACCACAATTTCTCACTCAATGTTCACTCATGCTTGGAGGAGAAGATGATGAATTGAACATTGCAACACAATTTTGCTCTGTTCCTAAAGCTGATGAAAATGAGTGTATGTTTTATTCTTTAGATGCTCACAACTCAAATTCACAGCACATTTCTCAAGAAAATAGTTATAGCAGCAATTGTACTGGTGACACTGTCTTCAATTCCAATCCTGGTCTTACAAACTACTTTTTGAATTACCCTGATCATGTGCTACTAGAAAATAATACTTGTGTACCATTGGATGAGAAAAATTTTGCTTCTTTTGTACCATCGGTTACTGACATTGTAATGGAAGAGAATGTCAAGTTGAATGAAGATGTGGGAAGTGACAACAACCACAGTCCAATGGAACCTATTGCTTTCCCAACCAAACAGTTGCAGCTCAAAAGGAAGCTTGTTGAAGATCAAATAGACAACAGATCTGAGAATCAGAAGAAAAAGGCTCGTGTTTTAAAAGATGGGCAAGGATGCATGAAAAATGCACGGTCTAAGAAGAATCAGAAACTTGTTAGTAATGGAGAAGAGTCAGAAGAGACTAATAATACAGGGTCAAATGGACAGAGCTCTAGCAGTAACATCTCAGAGGATGATAATGCTTCTCAGGAAAATAGTGGTGGAGCTACTTCAGGATCTAAATCTGCTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAGAGAAGAGAGAGAATAAATGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATTTATGGATGTATGCTCCGCTTGCTTATAATGGACTTGACATTGGACTCAATCTCAACATGAAGAGTTCTCTACCACTATGA 1068 0.3858 MESVGAFFPDSEWDCFRRMFANEEHDYYSPQFLTQCSLMLGGEDDELNIATQFCSVPKADENECMFYSLDAHNSNSQHISQENSYSSNCTGDTVFNSNPGLTNYFLNYPDHVLLENNTCVPLDEKNFASFVPSVTDIVMEENVKLNEDVGSDNNHSPMEPIAFPTKQLQLKRKLVEDQIDNRSENQKKKARVLKDGQGCMKNARSKKNQKLVSNGEESEETNNTGSNGQSSSSNISEDDNASQENSGGATSGSKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNMKSSLPL. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03653 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 341 - -
Seca7g03653 355 SMART finulus 275 324 IPR011598 GO:0046983
Seca7g03653 355 FunFam Basic helix-loop-helix transcription factor 270 327 - -
Seca7g03653 355 Gene3D - 268 326 IPR036638 GO:0046983
Seca7g03653 355 MobiDBLite consensus disorder prediction 178 195 - -
Seca7g03653 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 333 IPR036638 GO:0046983
Seca7g03653 355 CDD bHLH_AtIND_like 270 332 - -
Seca7g03653 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Seca7g03653 355 MobiDBLite consensus disorder prediction 178 281 - -
Seca7g03653 355 MobiDBLite consensus disorder prediction 202 273 - -
Seca7g03653 355 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03653 Seca-Chr7 110070250 110072080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03653 237 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 79.825 5.10e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g03653 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03653 - - gmx:100780907 437.573