Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03643 ATGGAAGACACGGGTAATAGGGTTAATGAGGGTGAAGCTGAAGATGCAAATAATTTGAAGTCCCCTGATGAAGAAAATGCTTGTTCTGTTGAGGATGTTACTGATGTATACAAAAGGATTTCTGAGTTAACTGATGATGACATTAGAATCCTTGAGTTCGATTCTGAACTGGATGGGTATAATTTTTATTCTGAGTATGCTAAATTCAAAGGTTTTGCGGTTAGGAAAGATGATGTTTATCGTGATCGTAATAGGTTAATTACCATGAGGCAATTAGTTTGTAACAGACAGGGGGAAAGGAGTGAGAAGCATTTAAATAGGGCTGACAAAATTAGGGAAGCTAAGGCAATTACTCGTACCAATTGTCTTGCAAGGCTTCGACTGTATTTTGATAAAAACAGTGGGAAGTGGAAGGTTGGAATTTTTGAGCCAGAACACAATCATGAGCTTACTCCTTCAAATATGGTTCATTTGATGCCTGCATATCGTGGGTTGAGTGCTGCTGATAAGGCACAAGTAAATAGTCTTCACTTATATGGTGTTAGGACTTGTCATATAATGGGTTTAATAATGGGTCAGAAAGGTGGTCACTCAGATTTGGGTTTTTGTAAGAAGGACTTGTACAATCACATTGACAAGGAAAATAGGGCCAAAATACATGATGGAGATGCTTTTGCTTCTTTGTGCTATCTTCAAGCTAAGTTTGATAGTAATCCAATGACAAGTAAAAACAGTCTCGTTGATTTTCTACACAATTTTGAAAGAGCTTTGAATGAATATAGGCACAATGAATTAGCTTCTGATTTTAAATCCTCATACACCCAGCCAGTTCTGACAACTGCTTTGGAAAAGTATGAAGTTAATGCGTGTAATGTTTACACCAGGAATAAGTTTTTTGAAATTAGAAAGCAAATTGAGAAAGTTGCTGCTTTGAATATGATTGAAAGGACTGAGGTAGGTAATGTTGTCACATTGAAGATGAATAAATTTGGAAGTCCTGATTCTGTATACCTTGTTTTGTTTGATAAGTCTGTTGGTAAGTTTGTATGTGATTGTCGGTTGTTTGAGTCATGTGGTTTACCATGTTCACATATCTTTTGTGCTATGAAGCATGAGCAAATAGAGTCAATTCCTCCTTCACTCATCTGCAAAAGGTGGACTAAGTTTGCTAAGGTTGATTATATTTCTGCAATTTATGCCGATGAGGGTGATACTACAAAGAAGGAAGTGTTGAGGTCCGGTGCTGTGGGTGCTACTTGTAATAGGCTTAACAAGGCTGCACATAAAGATCCTCATAATTTTGTGAAAAACATTGAGGCCATTCATCAATTAGCAGACCAGATGGAAAGGCAAGATGGGGTTGATGTCAACATTGCTGACATATCAAGGGTTGTCCGTGATCCAACTATTGTTAAAACCAAAGGTGCACCCCGTAAGAGTAAGAAAATCATGAAAAGAAGAAAATGCTCTTATTGTAAGCGTGTTGGGCATACAATCAGGACTTGTTCCAAGTTCTCAACGCGAGATCAGCTGCATACTGTAGAAGTAGAGGATTCTTCAGTTGAGAGTGATGGAGAATCAAGAGATTTAACGGTAATGCCTTGTGATATTGAATGTTGTATGAGATTTAGATTTATTGTCATAAACTAA 1650 0.3739 MEDTGNRVNEGEAEDANNLKSPDEENACSVEDVTDVYKRISELTDDDIRILEFDSELDGYNFYSEYAKFKGFAVRKDDVYRDRNRLITMRQLVCNRQGERSEKHLNRADKIREAKAITRTNCLARLRLYFDKNSGKWKVGIFEPEHNHELTPSNMVHLMPAYRGLSAADKAQVNSLHLYGVRTCHIMGLIMGQKGGHSDLGFCKKDLYNHIDKENRAKIHDGDAFASLCYLQAKFDSNPMTSKNSLVDFLHNFERALNEYRHNELASDFKSSYTQPVLTTALEKYEVNACNVYTRNKFFEIRKQIEKVAALNMIERTEVGNVVTLKMNKFGSPDSVYLVLFDKSVGKFVCDCRLFESCGLPCSHIFCAMKHEQIESIPPSLICKRWTKFAKVDYISAIYADEGDTTKKEVLRSGAVGATCNRLNKAAHKDPHNFVKNIEAIHQLADQMERQDGVDVNIADISRVVRDPTIVKTKGAPRKSKKIMKRRKCSYCKRVGHTIRTCSKFSTRDQLHTVEVEDSSVESDGESRDLTVMPCDIECCMRFRFIVIN. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03643 549 Pfam FAR1 DNA-binding domain 61 151 IPR004330 -
Seca7g03643 549 MobiDBLite consensus disorder prediction 1 25 - -
Seca7g03643 549 ProSiteProfiles Zinc finger SWIM-type profile. 337 373 IPR007527 GO:0008270
Seca7g03643 549 PANTHER OS01G0519700 PROTEIN 243 498 - -
Seca7g03643 549 SMART 26again6 348 375 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03643 Seca-Chr7 109903764 109906051 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g03643 FAR1 1.2e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03643 - - aip:107640898 281.952