Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03611 ATGGTATTGGTTGAAGGTCATCTTTTTCCTAGATTTCCAAAAGTAGTCATGACTATGACAAGGGGAGAGAAGGCTGAGTTAGTTGTTCAATCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGCGGGCTCCATTCAATTCCCCCAAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTGTGAAAGAAGGGGAGGGTGCTTTCACAGCCGGTGAGGGTGCAAATGTTACTGTCAGCTACACAGCTATGCTAGAAGATGGCACTGTGTTTGAGAAAGGAGGAATTGGTGAAACACAACCCGTGAAATTCATAACTGATGAGGAACAAGTGATTGCTGGTCTAGACCGAGCGGTGTCAACAATGAAAAAGGGTGAGAGGGCCATAATTAGCATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACGAGATTTAGCTATCGTGCCACCAGGCTCGAATGTAGTGTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAATGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTGTTTAAAGGTGGCAAGTATCATCAAGCAGGGAAGAAGTATGAAAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCACAAGCTAGCTAAGGCATTGAGAGTGACATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAACTATGTTCTCAGGTGCTTGATGTTGAGCTTTACAATGTGAAAGCTTTGTACAGACGGGCACAAGCATTTATAGAGACTGGAGACTATCTTTTGGCAGATGTAGACATCAAGAAAGTTCTTGAGGTGGACCCTCATAACAGGGAGGTAATGATAATTAAGAGGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATGTTTGCACCAAAAACAAAGGACTCATCCATGGCAACAAAGAGATTGAAGGTTGAGAAAGAAGAGGATGGGAGGGAAAACAAAGAGGTGAGAATGGAAATGGATATAGTTGCTGATAACGCAGCTCTTCCTGATGGTGGTATAATTGTTGATTCTTGTTGA 1197 0.4185 MVLVEGHLFPRFPKVVMTMTRGEKAELVVQSQYAFGEKGREAGSGLHSIPPNSVLHVNIELVSFKPVINVTGDSMVLKKIVKEGEGAFTAGEGANVTVSYTAMLEDGTVFEKGGIGETQPVKFITDEEQVIAGLDRAVSTMKKGERAIISIHPDYAFGNVEVRRDLAIVPPGSNVVYDIEMMDFIKEKAPWELNSNEKIEVAGRKKEEGNLLFKGGKYHQAGKKYEKAADFVSEDGSFGDDEHKLAKALRVTCWLNGAACSLKLNDFPGAIKLCSQVLDVELYNVKALYRRAQAFIETGDYLLADVDIKKVLEVDPHNREVMIIKRKLKQLQADSDKKDAKLYENMFAPKTKDSSMATKRLKVEKEEDGRENKEVRMEMDIVADNAALPDGGIIVDSC. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03611 398 FunFam Peptidylprolyl isomerase 66 187 - -
Seca7g03611 398 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 93 185 IPR001179 GO:0003755
Seca7g03611 398 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 90 181 IPR001179 GO:0003755
Seca7g03611 398 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 5 62 IPR001179 GO:0003755
Seca7g03611 398 SMART tpr_5 202 235 IPR019734 GO:0005515
Seca7g03611 398 SMART tpr_5 285 318 IPR019734 GO:0005515
Seca7g03611 398 SMART tpr_5 251 284 IPR019734 GO:0005515
Seca7g03611 398 SUPERFAMILY FKBP-like 5 64 - -
Seca7g03611 398 PANTHER PEPTIDYLPROLYL ISOMERASE 8 66 - -
Seca7g03611 398 FunFam Peptidylprolyl isomerase 190 345 - -
Seca7g03611 398 Gene3D - 65 189 IPR046357 GO:0003755
Seca7g03611 398 Gene3D Tetratricopeptide repeat domain 190 345 IPR011990 GO:0005515
Seca7g03611 398 SUPERFAMILY TPR-like 197 348 IPR011990 GO:0005515
Seca7g03611 398 Gene3D - 1 64 IPR046357 GO:0003755
Seca7g03611 398 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 65 IPR001179 GO:0003755
Seca7g03611 398 ProSiteProfiles TPR repeat profile. 285 318 IPR019734 GO:0005515
Seca7g03611 398 SUPERFAMILY FKBP-like 71 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03611 Seca-Chr7 108746288 108751604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03611 5 348 Calmodulin-binding Proteins AT3G25230 53.623 1.56e-125 372