Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03604 ATGAAAGGTGGTGTTTTGGGTGGCAACACCACTGAGAAATTGGATCTGAAGGTGATGATTGAGGAGATGGAGTCAATTGATGTGCCTTCAGTGTTTATCTGTCCAATCTCACTTGAGCCAATGCAGGATCCTGTGACCCTTTGCACTGGTCAAACATATGACAGATCCAACATCCTCAAATGGTTCTCACTAGGTCACAACACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCTGTCACCCCCAACAAGACTCTCAGCCAGTTAATCCTCACTTGGTTTTCACAGAAGTATTTGGCCATGAAGAAGAAGCTTGAGGATGTGCAAGGAAGAGTCTTGGACCTCTTGGACAGGCTCAAGAAGGTAAAAGGTCAAGCTAGAGTTAGAGCTCTTAAGGATCTTCGCCAACTTGTTGTTGCTCATGTGTCTGCTAGGAAGACTGTTGCAGAAAATGGTGGACTTGCTTTGGTTTCTTCTTTGTTAGGTCCTTTCACTTCCCATGCTGTTGGTTCTGAAGCTATTGGAATCATTGTGAATTTGGATTTAAGCTCAGAGGTGAAGAGAAATCTGATGCATCCGGCAAAGGTTTCACTTTTGGTGGATATTATGAATGAGGGAACCATTGAGACAAAGATGAACTGTGCCAAATTGATTGAGATGTTGTTGATGGAAGGGAATGGAACTGAGACAGAGATTGTCTCAAGCTTGAGTCTTTTGGTTGGTTTATTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGCCTCATATTACTCAAGGCTATTTGTTCACATGAATCAGTTAGAAGCTCTGTGGTAAGCATAGGAGCAATTCCTCAATTAATTGAGCTTTTGCCCACTTTGAATAATGAGTGTTTAGAGATAGCACTGTATATTCTAGAGGTATTGTCAACACTTCCAGAGGGAAGGATGGCTTTGAAAGAATGTCCAAACATAATTCCCAATGTGGTCAAGTTGTTGATGAGAGTCTCAGAGAGCTGCACACAATTTGCATTGTCAATATTGTGGTCTATCTACAAGCTTGCCCCTGAAGAATGTGCATCACAAGCAGTGGAGGCTGGGTTGGCAGCAAAACTATTACTAGTGATTCAGAGTGGCTGTAACCCAGTTTTGAAGCAGATGTCTTCTGAGTTTTTAAAAATGTGCAGTCTGAATTACTCTACAAATATCTTGATTTCCAAATGTATGCTCACCACAACAATACAATGA 1242 0.4195 MKGGVLGGNTTEKLDLKVMIEEMESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNKTLSQLILTWFSQKYLAMKKKLEDVQGRVLDLLDRLKKVKGQARVRALKDLRQLVVAHVSARKTVAENGGLALVSSLLGPFTSHAVGSEAIGIIVNLDLSSEVKRNLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLMEGNGTETEIVSSLSLLVGLLRLVRDKKHPTGVLTGLILLKAICSHESVRSSVVSIGAIPQLIELLPTLNNECLEIALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSESCTQFALSILWSIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTNILISKCMLTTTIQ. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03604 413 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Seca7g03604 413 SUPERFAMILY ARM repeat 111 245 IPR016024 -
Seca7g03604 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 110 IPR013083 -
Seca7g03604 413 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Seca7g03604 413 Gene3D - 112 392 IPR011989 -
Seca7g03604 413 PANTHER WDSAM1 PROTEIN 22 399 IPR045185 GO:0061630
Seca7g03604 413 SUPERFAMILY RING/U-box 22 98 - -
Seca7g03604 413 Pfam U-box domain 28 98 IPR003613 GO:0004842|GO:0016567
Seca7g03604 413 CDD RING-Ubox_PUB 29 81 IPR045210 -
Seca7g03604 413 SUPERFAMILY ARM repeat 234 399 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03604 Seca-Chr7 108647849 108649090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03604 12 413 U-box Gene Family AT3G49810 66.418 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03604 - - gmx:100803878 665.611