Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03569 ATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCAGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGCTTGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAATATGTTGCCCACTTGAGGAGAAAGAGTAGCGGATTCTCAAGGGGTGCATCAATGTACAGAGGGGTCACAAGGCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGGAGAGTTGCTGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCAGCAATCAAATTTCGTGGTGTGAATGCAGTTACCAACTTTGACATATCTAGATACGATGTTGAAAGAATCATAGCCAGCAATACCCTGCTTGCTGGGGAGCTAGCAAGGAGAATCAACAAGGACACTGAACCAAGAACTGAGGCCATTGAGTGCAATGCTGTATCAAGCCCCATCACAAACAGGGAAGATGTTGAAGCAGTGAACAACAATGAAACTGCTTCAGAGTGGAAGATGGCTTTGTATCAGTCCCCACAACAAGAGTCAAGTAACTGTGACCCCAAAACTCTCAAGTGTGGAAATTATAATAATAGAAACTCTGCTTTCTCTGTGGCCCTACAAGACCTTATTGGGATTGATTCAGTAGGATCTAGCCAAGCCATGCTAGATGACACTACCAAAGTAGGGACTCATTTTTCAAACCCATCCTCTCTGGTGACCAGTTTAAGCAGCTCAAGAGAAGGTAGTCCTGATAAAACTGGCCCCACATTGCTCTTTCCAAAGCCTCCATTGGGATCAAAGGTTCTGAGTCCAATTTCTAATGGTGTTACCTCTTGGTTTCCCTCAGCAGCTTCTGCTCAATTAAGGCCAGCTACTGCTATCTCAATGTCTCACTTGCCAGTTTTTGCTGCATGGAGTGATACCTAG 963 0.4465 MEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIIASNTLLAGELARRINKDTEPRTEAIECNAVSSPITNREDVEAVNNNETASEWKMALYQSPQQESSNCDPKTLKCGNYNNRNSAFSVALQDLIGIDSVGSSQAMLDDTTKVGTHFSNPSSLVTSLSSSREGSPDKTGPTLLFPKPPLGSKVLSPISNGVTSWFPSAASAQLRPATAISMSHLPVFAAWSDT. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03569 320 CDD AP2 61 122 IPR001471 GO:0003700|GO:0006355
Seca7g03569 320 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Seca7g03569 320 ProSiteProfiles AP2/ERF domain profile. 1 26 IPR001471 GO:0003700|GO:0006355
Seca7g03569 320 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Seca7g03569 320 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Seca7g03569 320 Gene3D AP2/ERF domain 1 28 IPR036955 GO:0003700|GO:0006355
Seca7g03569 320 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Seca7g03569 320 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Seca7g03569 320 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Seca7g03569 320 FunFam AP2-like ethylene-responsive transcription factor 61 122 - -
Seca7g03569 320 SUPERFAMILY DNA-binding domain 2 28 IPR016177 GO:0003677
Seca7g03569 320 SUPERFAMILY DNA-binding domain 61 122 IPR016177 GO:0003677
Seca7g03569 320 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 194 - -
Seca7g03569 320 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03569 Seca-Chr7 107887615 107889238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03569 43 320 AP2-EREBP Transcription Factor Family AT4G37750 24.917 2.89e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g03569 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03569 K09285 - gmx:100798179 498.049