Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03548 ATGATGGGTTTTGATGGGCTTCAACTTGGTCTTGGACTAGGCCTCAATGATCAATCAGAGGATTATTGCATCAAGATTGATGACCAAAGCCAGAAGAAAAAGATGGAGAATCAATCAAAATGTCATAATAAGGCATATCCATCACTTACGTTAGGACCACCAAAAGAGGATGAAGTAAATGATCAAACTTTATTAGCTTCAAAGACTGAATCCTATGAATATTTCCGTCCCCAACAAGTTTTTTCTCCTAGCGCAGAGTCTTCATTTTCCAACTCATCAAGCATCAAGAGGGAGCGAGATCAAGTTCTTGGTGGAGAGGAATTTGAGGTAGAGGTAGAGGTAGAGGTAGAGAAGGTTCCAATAAGGGTAGATGTTGATGAAGATGGTAATCCCAGGAAGAAACTCAGGCTAACCAAAGAACAATCCGCAGTCTTGGAAGAAAACTTCAAAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAGAAAGCTGAATTTGCGGGCGAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGAGCCAGGACAAAACTGAAACAAACCGAGTCAGAGTGTGAACTACTAAAGAAGTGTTACGAGACTCTGACGGAGGAGAACAAGAAGCTACAAAAGGAATTGCAAGAACTCAAGTCAATGCCAATGCAAACAACGCCAGCACCTTTTTACATGCAGATTCCAGCAGCCACACTTAGCATATGCCAATCCTGTGAGAGAATTTGCGGTGGCAATAGTAATGGATCCTCACCCACGACAACGTTGCTTATTGGCTCAAAGGCCCATCATCATCACTTTTATACAAATAATAACTATCCATTTCCCCACTCATCATCTGCAGCATGTTAG 870 0.4207 MMGFDGLQLGLGLGLNDQSEDYCIKIDDQSQKKKMENQSKCHNKAYPSLTLGPPKEDEVNDQTLLASKTESYEYFRPQQVFSPSAESSFSNSSSIKRERDQVLGGEEFEVEVEVEVEKVPIRVDVDEDGNPRKKLRLTKEQSAVLEENFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTESECELLKKCYETLTEENKKLQKELQELKSMPMQTTPAPFYMQIPAATLSICQSCERICGGNSNGSSPTTTLLIGSKAHHHHFYTNNNYPFPHSSSAAC. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03548 289 MobiDBLite consensus disorder prediction 33 59 - -
Seca7g03548 289 Coils Coil 180 221 - -
Seca7g03548 289 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Seca7g03548 289 SUPERFAMILY Homeodomain-like 129 196 IPR009057 -
Seca7g03548 289 CDD homeodomain 131 189 IPR001356 GO:0003677
Seca7g03548 289 Pfam Homeobox associated leucine zipper 188 221 IPR003106 GO:0006355|GO:0043565
Seca7g03548 289 Gene3D - 125 201 - -
Seca7g03548 289 SMART halz 188 233 IPR003106 GO:0006355|GO:0043565
Seca7g03548 289 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Seca7g03548 289 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Seca7g03548 289 FunFam Homeobox-leucine zipper protein 18 121 193 - -
Seca7g03548 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 27 259 - -
Seca7g03548 289 SMART HOX_1 130 192 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03548 Seca-Chr7 107153105 107155596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03548 95 248 Homeobox Transcription Factor Family AT4G37790 63.291 7.83e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca7g03548 Homeodomain 5.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03548 K09338 - gmx:100797650 365.925