Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03542 ATGGCTGGCCCTTTTGACATGATAAGTGCTATCCATCCTGGGAAAGACTCTTGGAGGTTGAGAGTGAGGGTGGCTCGCCTCTGGGACATGTGTTCCATTGTAGATCCTTCAAGGCCATTTGCCATTGATATGGTCCTTATTGATGTTGAGGGTGGAAATATTCAGGCCACAATTCGAAAGCCAATGATGAAGAAGTTCAAGGATGTGATTGTTGAGGGTGAGGTGTACACAATGTTGAATTTTGCTGTGATAAAGAATGTTGGGAGTTATCGTGCCTCCAGGCATGAGTACAAATTGTTGTTTAGTGCCAAGACAAAAGTATTTCCAGCTAAATCTTGTGCGATACCATCTGTTGGACTGTCGTTAATGAGCACTGAGCAAATTACTAAGACTAATGGAGAGTCGAATTATCTGTTTGACTTCATGGGTGTCTTGACTGCTATTTCTGCTGAGAAAGTGGTTGAAACTGAAGGGAGGAAGACAAGAATGATGGAAATGGAGCTTGCTGATGACAAGGGAAGGCTGCGATGCACAGTCTTTGGTGACTATGTTGAAACTCTGAACAGCTATGTGGCATTAGGTGTCACTCCATTGCCAGTTGTTGTTGTGCAACTTTTCAAAGTTAGGTTATATAAGGGCAACGTTGTTTTGCAGAATGTGAACAACACCTCCAGGATTTTGTGGAATCCTGATTTTACTGAAGCGAACAACTTTAGGAATAGCTTGGCTTGCCATGGAATTGACTCTGATGTTGAGATTGGGGTTATAGAGCCAGGGAACCGTGTTGTTCCACTGGCTGATGATTTTTTGAGACTGCACCCTAGGAAAACTCTCAATGAGCTTCAGATCACTGAGGAGGACGGTATTTTTATTGTGCATGGAACTATTGTCTCTGTATTGAAGGAGGAACAGTGGTGGTATGGGGCTTGCAAGTGTTATAAAGCGGTTACACCTGATGGGGGTCTCTATTACTGTTCTAATTGTTGTACACATGTTGTGGAAGTGACCCCTAGGTATAAAGTGAAGGTTGAAGTTTTCCATTGGGATGATTCTGCATGCTTGATTTTGTTTGACTCAGATTGTGTTTCTCTTCTGGCTAAGCCTTGCAAGGAGTTGCTTGCGGAGTCCAAGGGTTCAAAGGCTGGTGAACTTCCTTCTGATATTATGGGTCTGATTGGGAAGGAACTTCTGTTTAAGTTGAAGACATATTGTTGTGTTCACTGGTTAGCACAAACACAGAAAACCTTCTTGGTTGCATTTGGGCTCATGCGTTGCTTGAATAGAAGGAGGGTCCGAATGCCTGGTAGGAAATTCTTTGTTGTCTTCCGCGAGTATGAGGGGCATATACCCATTCCCAGGTGGTTTTTCCAAAGATGGGGAGATCTTTTGGATGATATTGTTTTACTGAAAGATCCAGTTGGGAATCTTTTCCCGGTTTACATATGCATCAGGAATGAGCGTGGATACTTTTTCCTTGGGGTTGAAAAGCTTAGAACTGCATATGCTCTGCACACCACGTTCACAGTGGCCTTTTTATTGTGA 1542 0.4319 MAGPFDMISAIHPGKDSWRLRVRVARLWDMCSIVDPSRPFAIDMVLIDVEGGNIQATIRKPMMKKFKDVIVEGEVYTMLNFAVIKNVGSYRASRHEYKLLFSAKTKVFPAKSCAIPSVGLSLMSTEQITKTNGESNYLFDFMGVLTAISAEKVVETEGRKTRMMEMELADDKGRLRCTVFGDYVETLNSYVALGVTPLPVVVVQLFKVRLYKGNVVLQNVNNTSRILWNPDFTEANNFRNSLACHGIDSDVEIGVIEPGNRVVPLADDFLRLHPRKTLNELQITEEDGIFIVHGTIVSVLKEEQWWYGACKCYKAVTPDGGLYYCSNCCTHVVEVTPRYKVKVEVFHWDDSACLILFDSDCVSLLAKPCKELLAESKGSKAGELPSDIMGLIGKELLFKLKTYCCVHWLAQTQKTFLVAFGLMRCLNRRRVRMPGRKFFVVFREYEGHIPIPRWFFQRWGDLLDDIVLLKDPVGNLFPVYICIRNERGYFFLGVEKLRTAYALHTTFTVAFLL. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03542 513 CDD RPA1_DBD_C 276 403 IPR047192 -
Seca7g03542 513 Pfam Replication factor-A C terminal domain 291 403 IPR013955 -
Seca7g03542 513 Gene3D - 4 109 IPR012340 -
Seca7g03542 513 CDD RPA1_DBD_B_like 140 234 - -
Seca7g03542 513 SUPERFAMILY Nucleic acid-binding proteins 273 402 IPR012340 -
Seca7g03542 513 CDD RPA1_DBD_A_like 19 107 - -
Seca7g03542 513 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Seca7g03542 513 Gene3D - 114 249 IPR012340 -
Seca7g03542 513 PANTHER OS03G0429900 PROTEIN 7 400 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca7g03542 513 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
Seca7g03542 513 Pfam Domain of unknown function DUF223 44 112 IPR003871 -
Seca7g03542 513 Gene3D - 271 407 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03542 Seca-Chr7 107063368 107067589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03542 8 401 Core DNA Replication Machinery Family AT4G19130 23.419 2.97e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03542 - - lja:Lj6g3v0884310.1 359.762