Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03541 ATGGAGGAATACACTAATAATCATCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCCTCTTCTTCAGCTGGAAACCAAAACCAAAACCAAAACCATCAGCATCTTCAGTTTCCAATCAACACCTTTAATCTTCAATCAGGTGGATCAGATCACTGCTTTCAATCGGATCAAGCATCACCACATCACCCTGCTGTGAAAACCGAAGCAAGCACCTCACAGCTTCATACTCCGATTTTCCATTACCCTTTAATGAGAGGAAATCTTGTTATGCATCCTCCACAACAAGGAGGTGGAGGAGGGAGTCCAAGCTCTAGTAGTGAAGCTGAAGCCATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTAGAAGCCTACACGGATTGCCAAAAGATAGGAGCTCCACCGGAAGTGGTGGCGCGTTTGGTTGCTGCAAGGCAAGAGTTTGAGGCAAGGCAACGATCTTCAGTTAGCTCCAGGGAAACTTCCAAAGATCCAGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTGACAAGGCCTATACAAGAAGCAATGGATTTCATGAGGAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTTCGGATCTTCTCTGGTACTTCCTTACTTTATCTTTCTTTCTTTCTCTATGATAAATGTGAAGGTGCTGGTTCGTCAGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTGCCCGAGATTGATCCCCGAGCAGAAGACCGTGAACTCAAAAACCACTTGCTGAGGAAATACAGTGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATACCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCACAGAACGCAGCTCTTTATATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGACCATAA 1149 0.4299 MEEYTNNHPSPSPRPNFLYSSSSAGNQNQNQNHQHLQFPINTFNLQSGGSDHCFQSDQASPHHPAVKTEASTSQLHTPIFHYPLMRGNLVMHPPQQGGGGGSPSSSSEAEAIKAKIIAHPQYSSLLEAYTDCQKIGAPPEVVARLVAARQEFEARQRSSVSSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSGTSLLYLSFFLYDKCEGAGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAALYMDGHYMADGHYRLGP. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03541 382 Pfam ELK domain 264 285 IPR005539 GO:0003677
Seca7g03541 382 MobiDBLite consensus disorder prediction 239 261 - -
Seca7g03541 382 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Seca7g03541 382 SMART HOX_1 286 351 IPR001356 GO:0003677
Seca7g03541 382 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
Seca7g03541 382 CDD homeodomain 296 348 IPR001356 GO:0003677
Seca7g03541 382 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 354 - -
Seca7g03541 382 MobiDBLite consensus disorder prediction 49 72 - -
Seca7g03541 382 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
Seca7g03541 382 FunFam Homeobox protein knotted-1-like 2 289 351 - -
Seca7g03541 382 MobiDBLite consensus disorder prediction 90 109 - -
Seca7g03541 382 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Seca7g03541 382 Gene3D - 289 351 - -
Seca7g03541 382 ProSitePatterns 'Homeobox' domain signature. 322 345 IPR017970 GO:0000981|GO:0006355
Seca7g03541 382 Pfam KNOX1 domain 111 153 IPR005540 GO:0003677|GO:0005634
Seca7g03541 382 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Seca7g03541 382 SUPERFAMILY Homeodomain-like 285 359 IPR009057 -
Seca7g03541 382 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677|GO:0005634
Seca7g03541 382 SMART ELK_2 264 285 IPR005539 GO:0003677
Seca7g03541 382 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03541 Seca-Chr7 107016114 107021739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03541 1 382 Homeobox Transcription Factor Family AT4G08150 61.298 1.18e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca7g03541 KNOX2 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03541 - - gmx:100800822 609.372