Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03534 ATGGGAAGAGCACCTTGTTGTGACAAAGCAAATGTTAAGAGAGGACCATGGTCTCCAGAAGAAGATGCAACACTCAAGAGTTATTTAGAGACTCATGGCACTGGGGGAAATTGGATTGCATTGCCAAGAAAAGCTGGCCTTAGGCGGTGTGGGAAGAGTTGCCGTCTGAGATGGCTCAATTATCTTAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAAGAGGACAACATCATTTGCACCCTCTATACTCAGATGGGAAGCAGATGGTCTGCTATAGCATCTCAACTTCCTGGCAGAACAGACAATGATGTGAAAAACTATTGGAACACAAAACTAAAGAAGAAGATGATGGCAGGGAAAGTTAGCCTCAAATCCCAGCTGACAGCAAATGACACTCTTCCTTCAGCTTCAGCTCCATCATCACTAATTCAAAATGCTATGACTCAAATTTCAGATTTCCCTGCTTCACAAAATCAAAATCCCCCTCCACCCTCAAGTTTGCCAATCTTAGATACTAATGATGCTAGTTCTGGATTCAACATTATTGAAAATAACATGAGTTTTGACCAAATTCATCATCAGTTGTACAGTTCACAGTTCATAGATGCTGTCCCAGAAATTGGTGCAAGTTTAAGGAACAACAATCCCTTAGTGTCATTGTCTCAAGAAGATTCAGGGAACAATAATCCCTTAGTGTCATTGTCACAAGAAGGTTCAAGGATCAACAATCCAATAATGTCATTGTCTCAAGAAGGTTCAAGCATTTCAGATTCCTCTTCCATTGCAGTGAACAACCAGTGTGTATCTTTACCAGGGCATGCTGGTAGTGAATCTACAGATATGTTGATGGATTTTGGCTTTGGATTTCCTTATGATCTTGCCAATGGTCTTAACTGCCATGAGAGAGTTGGTGAATTTGCTTCAAGTTTCAGCTATACTGAGTGGGTTGATTTTAGCTATGCTGAAATTAAGCCAGATTGA 984 0.4106 MGRAPCCDKANVKRGPWSPEEDATLKSYLETHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYTQMGSRWSAIASQLPGRTDNDVKNYWNTKLKKKMMAGKVSLKSQLTANDTLPSASAPSSLIQNAMTQISDFPASQNQNPPPPSSLPILDTNDASSGFNIIENNMSFDQIHHQLYSSQFIDAVPEIGASLRNNNPLVSLSQEDSGNNNPLVSLSQEGSRINNPIMSLSQEGSSISDSSSIAVNNQCVSLPGHAGSESTDMLMDFGFGFPYDLANGLNCHERVGEFASSFSYTEWVDFSYAEIKPD. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03534 327 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Seca7g03534 327 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca7g03534 327 MobiDBLite consensus disorder prediction 154 173 - -
Seca7g03534 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca7g03534 327 CDD SANT 71 113 IPR001005 -
Seca7g03534 327 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca7g03534 327 FunFam Transcription factor RAX3 7 68 - -
Seca7g03534 327 CDD SANT 16 62 IPR001005 -
Seca7g03534 327 Gene3D - 70 135 - -
Seca7g03534 327 FunFam Transcription factor RAX3 70 137 - -
Seca7g03534 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca7g03534 327 SMART sant 13 64 IPR001005 -
Seca7g03534 327 SMART sant 67 115 IPR001005 -
Seca7g03534 327 PANTHER OS09G0431300 PROTEIN 1 260 - -
Seca7g03534 327 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca7g03534 327 Gene3D - 7 68 - -
Seca7g03534 327 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03534 Seca-Chr7 106674651 106676572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03534 1 118 MYB Transcription Factor Family AT3G49690 82.203 4.81e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g03534 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03534 K09422 - gmx:100789985 426.017