Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03507 ATGGCCATGGAGAATGATATGTACTGTGCTCCACTGGACATGGCTGGCCGAAATTCTACTGTCATAGAAGATATTACTCAGCATCTCACACCAAAGCCACTCATTTATTGCTATTCATTTGACCTCAATAACCAAAACCACATGATAAATGGAATTCCATTACTTGCTGGAGAGCAAGGTGAACCAGTAAGAAGTGACCAGGTAGATGGTCACTTCACAAACCTTGCTAATTCTAATTCATTTGTTGCATCATCACAAGGAAAGACTATTGTGGGAAATGCCTCAAATCCTATTGACAACACTAACTTTCAAGAGCATTTAGCTGGAGGAAGGTCAATTCCTTCAGCTTCACTTCCTGCTAGAATTGGTCTTCAAGAAAATTTAGAAAATCCAGCAGCTTTGTCTCCTTCAGTCTATTCATTGGAGGCATTGGGGCCATATATCTTTAATAATTGGCAAGATGCCTCAAACCCTTTGTCTGCAACTTTTGGTGAGAGTGGCTATGAGGAAGTACCCAGTAATGGTAGGTGGAATGTCAACAAGTTTCTGAAAGCCCCAGAGGTTGATGGGACTGGGTTGCTGTCTTATTCATCCATAGGAAACCTGGATCCACATGGATGGACATCATCAAATGTTGCAAACTTGGCTAATCTTGCTTATAGTTCCTCTAAGTGTAGTAATGAGCCATCACTAAGTCTTGCAACATCTCCAACCACAGGTCAGTGCTCAGAGATGAGCTGCTCTGACTTAACTCATAGCACAAATGGAACAAGATCAGGGTTGGAGCAAGCCTCCTGCAGCAGTATGGAACTGTCTATGAGTTTAGGTTCTAATAAAAATGTTAAGTTTTCACCAGCAATCCTGGGATCAAGATACCTTGCTGGAATTCAGGAGATACTTGTTCAAATTGCAACATATTCATTTCAAAATCTTAAAGAGATAAATCATTCATCTACTAGTGTTAGATCAACTTCAGCTTTCACACCCAACAGAAGAACAGCAATGCATCATAATTCAAGTTCTATGTTTGAAGCACATGCAGAATCTCCATTGCATAAACATGCTTCTGAATCAAGCAAATCCCAACTGCTGATGCTTCTACAGCTGGTAGACAATCAATATAGTCAGTGTCTGGATGAGATTCATACTGTTGTATCTGCATTCCATGCTGCTACTGAGCTAGACCCACACATACATGCACATTTTGCTCTTCAAACAATCTCTATCCTATACAAGGACTTGAGAGAGAGGATCAGCAATCATATTCTTGCCATGGGATCCAATTTTAACAGCTCATGCTCAGAAGAGGAGAATGAATGGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGACCAGTTATGGAGGCCCCAAAGGGGGTTGCCAGAAAGATCTGTCTCAGTTCTACGTGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCCAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACAAGAAGTCAGGTATCAAACTGGTTTATAAATGCAAGAGTTAGGCTATGGAAACCTATGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGAAGGAAAGGAGAACTGTCATAGAAGCAGGATAAGCATGAACAATCAAATGTTTAATATCAATTGA 1689 0.4032 MAMENDMYCAPLDMAGRNSTVIEDITQHLTPKPLIYCYSFDLNNQNHMINGIPLLAGEQGEPVRSDQVDGHFTNLANSNSFVASSQGKTIVGNASNPIDNTNFQEHLAGGRSIPSASLPARIGLQENLENPAALSPSVYSLEALGPYIFNNWQDASNPLSATFGESGYEEVPSNGRWNVNKFLKAPEVDGTGLLSYSSIGNLDPHGWTSSNVANLANLAYSSSKCSNEPSLSLATSPTTGQCSEMSCSDLTHSTNGTRSGLEQASCSSMELSMSLGSNKNVKFSPAILGSRYLAGIQEILVQIATYSFQNLKEINHSSTSVRSTSAFTPNRRTAMHHNSSSMFEAHAESPLHKHASESSKSQLLMLLQLVDNQYSQCLDEIHTVVSAFHAATELDPHIHAHFALQTISILYKDLRERISNHILAMGSNFNSSCSEEENEWSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRNEEGKENCHRSRISMNNQMFNIN. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03507 562 Pfam Associated with HOX 287 419 IPR006563 -
Seca7g03507 562 CDD homeodomain 463 524 IPR001356 GO:0003677
Seca7g03507 562 SMART prehox3 281 420 IPR006563 -
Seca7g03507 562 SMART HOX_1 463 527 IPR001356 GO:0003677
Seca7g03507 562 SUPERFAMILY Homeodomain-like 465 532 IPR009057 -
Seca7g03507 562 Gene3D - 466 545 - -
Seca7g03507 562 ProSiteProfiles 'Homeobox' domain profile. 460 523 IPR001356 GO:0003677
Seca7g03507 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 239 537 - -
Seca7g03507 562 Pfam Homeobox KN domain 480 519 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03507 Seca-Chr7 105721703 105724235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03507 222 536 Homeobox Transcription Factor Family AT4G32980 56.113 6.00e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca7g03507 POX 7.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03507 - - gmx:100812648 809.29