Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03502 ATGGGAAATAAGAAGAGCAAAATTGGAATTGTGTTGGAGAAGTCTGTTAGGAGAGAAAGGAGAGTTCTAACAATATGGACAGGTGGCAACAAATCATTGGAGAAGGGGGAGTGGGAAGCTTGGGGAGAGGGGGGGGGTAAACTGTATCTGCTGCTCCTTGGGACCACAGCTCTTAGTCTGGTGACAACTCCTTTACTTTTCAAGCTAATTCCTGCTGTAGTGCATCTTGGTGTGCTACTGAGGTGGTTCTCTCCTGACAGTTCAGTGGAGATTGGATTTAAGGTAGATAACCTCCGCTCAGATAGTGGGGATGCTCATAAATGTATGATATGCTATGGCACAACTCCCTCCCAGTCAATTCTATTCGAGCTGCTCGTGGGCTTTCCAATTCTGACATTTGCTCTGCCTGCCAGGGTTCAAAGGGAGACCTTAGTCCATTGTTTTAGGGATTGTAAGTTTGCCAAGGATTTTTGGCAAACAGTGGGTGTGCAAATTATAGATTCTATTTCTATACAGGATTTTAGGGAATGGATTCAAACCAATTGTTTATCTAATCCTCTCAATTTCCCAAGGACTCTCTGGAATCTTTGTCGCAGCGTTTCGTTGCTTGGGTACCCCCCTCCTAACATGGCGTTAGCGTTGAACACAAACAACAGCTCCTTGGGAAATCTAGGAGAAGTTGGGATCAGTGGTGTTTTTCGGGATGCGACAGGGGCTTTGGTTCTTGGCTACTTCTCATCAATTGGTGTTTCATCAATTATTGTCGCTGAGCTCAAAGCTATTCTCTACGGGTTGCAGATCGCATGGGACAAACAATACAGTAAAATCAATTGTTTTACAGATTCAGCTCATGCAATCAAGTTAATCACAGATCAGGATATCACTTACCATCCTCTTGCTACGGTCATCTCCGACATTAGAGAGCTCCTTAATAGAAGCTAG 942 0.4427 MGNKKSKIGIVLEKSVRRERRVLTIWTGGNKSLEKGEWEAWGEGGGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSSVEIGFKVDNLRSDSGDAHKCMICYGTTPSQSILFELLVGFPILTFALPARVQRETLVHCFRDCKFAKDFWQTVGVQIIDSISIQDFREWIQTNCLSNPLNFPRTLWNLCRSVSLLGYPPPNMALALNTNNSSLGNLGEVGISGVFRDATGALVLGYFSSIGVSSIIVAELKAILYGLQIAWDKQYSKINCFTDSAHAIKLITDQDITYHPLATVISDIRELLNRS. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03502 313 CDD RNase_H_like 214 312 IPR044730 -
Seca7g03502 313 Gene3D - 211 313 IPR036397 GO:0003676
Seca7g03502 313 Pfam Reverse transcriptase-like 225 312 IPR002156 GO:0003676|GO:0004523
Seca7g03502 313 SUPERFAMILY Ribonuclease H-like 214 309 IPR012337 -
Seca7g03502 313 PANTHER OS05G0353850 PROTEIN 206 312 - -
Seca7g03502 313 ProSiteProfiles RNase H type-1 domain profile. 208 313 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03502 Seca-Chr7 105674869 105679433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03502 47 110 Antiporters AT2G19600 79.688 1.74e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03502 K26735 - gmx:100811030 100.523