Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03491 ATGCCCAAAATGAAGCATCTACTCAGAAAGCTTCACATCGGTGGTGGAGCTGCCACTATTAATCACAATCACACTCACAACACATTGCCTCACGCTCACACTCCTCCGTCTTCTTCCGCTCTCCCATCTCCGCCCACTCCATCGCCAATCGTCGTTCCCAATCGGAACCCTGTCGTTAACGCCCAAAACGACAGCGCCGGCAACACCACCAACAACAACAACGGTGTCGTCGACTTCAATCTCTTGGAGGAAGAAGAGTTTCAGGTGCAGTTGGCTCTTGCAATCAGCGCTTCCGATCCTGATCCCCACCACGACCCCGCCGAATCCGCACAGATCGATGCCGCCAAACAGATCAGCCTCGGTTATTCGGCTTCTCTCACTGACACCCAAGCCCTCGCTCAGTTTCAATCCCTTCGATACCGGATAATCAGAATCACACTGGGAGTTAGGGGTAATATTCATGTATCATGTGTCCGTTTCTTATTTAGGAACTACAATGTCATTAATTATGATGAGAAAGTGATGGATGGGTTTTATGACGTTTATGGGATCACTTCAAATTTGAGTGAACGAGGAAAGATGCCATTGTTGGTGGATCTACAAAGTACTCATGTCTCGCGCAATGTTGATTGTGAAGTGATTTTGGTGAATCGCATAGTTGATATTGAGCTGAATCAGCTTGAGAAAAAAGCATATAATTTGTTCAAAGAGTGTCGAGTTTCTGAACTAGGACTAATTTTGAGTGGCTTACTTCAGAAACTTGCTGATGTTGTTGCTAATAGAATGGGTGGACCAGTTGGTAATGCTGATAAAATTGCAAAAAGGTGGGATGTGAGGAGTCGTGAGTTACGAGATTCTTTAAGAACCATTGTCCTCCCCCTTGGCTCTCTTGATGTTGGACTTTCGCGTCACCGTGCCCTACTTTTTAAGGTACTTGCTGACAGGATTAATATTCCCTGTATGCTAGTAAAAGGGAGCTATTACACAGGATCTGATGATGGAGCCGTGAATTTGATCAAAGCTGATGATGGATGTGAATACATTGTTGATATGATGGGTGCTCCCGGAACTCTTATTCCTGCCGAGGTACCCAGCAGTCAGCTCCAAAACGATGGTTTTGCTGTTAGAGGTTGTGCAGAGATTATAGGACTACCTAACAACACAAATTTGATGTTTGATGATGGAACTGGCGTGCCAGGAATCTTCTCTGATCGTGTTAGAATTTCAACAATGGGGCAGGTCCAGACAGAAGAATTATTAGACATGGGCTGTCATCAAACAAAACCAGATGAAATAAATCGGGTTAAAGTAAATGAAACAGGGGGATTTGAACATAAAGAAGCACATGGAGGCTCATCACATACAGAATCATCACCTGCAAAAAATATGCATGTGAAAAATGTCTCCAAGTATGCCCTTGGTGCAGCAAAGAACCCAGAATTTGCCCCAGAACTGCACACTGTTAAATTAGAGAGCGGTGCATCACCTCCTCCTGATCTTTTTTCATATATAAATCCCAAAGATTGGAGTGTAGATAAAGTAAATGAAAAGAATGATGTTGATACCATTCAAGCTGACCCAAATAGGCTGTTATTAAGCTATAAGAAATCTGTCATACCCTTTCAAGTGGTAGGCTCTGCCAGCAATACTAGGTTTTGTCAATCTGCTGACCGGTTATCTGAACAGCAAGAAGAATTGCATACAGATGCCATTGAATTTTATGATTCTTCACAGAGTGATAATACACGGAATGGGTTTGCAACTGTTTCTGGTAGAGATAATGATTTAGAGAAACCCAATCCATCATTTATTGGTTCAATTTCTATCAATACACATAAGGCATGTAAAGAAAAGTGTCTTGATTCTTCCTTGTCCAATGAAAATGGTCTTAGAAATAAGATTGGAGCTTCTTTTAATAATATTGAATCAGGGAAAGATTCAGCCATTCAAATAAATGAGACTGTCAATGGAGATTGCATTCTATATGATGGTAAAGGTGAGAAGGTCAACTCAGTACTTGGTGAAGGCACGGAATGGGAAATTCAATGGGAGGATCTTCGTATTGGTGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTACCGTGCTGATTGCAATGGCACCGAAGTGGCTGTAAAGAAGTTTCTAGACCAAGACTTCTCTGGTGATGCATTAGCTCAGTTCAAATCTGAAGTTGAGATCATGTTAAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGAGGCAGTTTATATAGGATATTGCATCGTCCTAATCTTGTACTTGATGAGAAGCGACGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACCAGCCATCCTCCCATTGTCCATCGAGATTTGAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGCATGAAGCACCATACATTTTTGTCATCGAAGTCTTGTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTCTTGAGAAATGAACCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTGACTACCACAAGTATCCCATGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGGCTTGAAATTCCAGAAGATGTGGATCCAGTAGTAGCACAAATAATACGTGATTGCTGGCAAACGGAGCCACACTTGCGGCCATCATTCTCACAGCTGATGTCTCGTCTTTACCGTCTTCAACGTCTGGTTGTCCGTAAAACGGGCTGA 2853 0.4297 MPKMKHLLRKLHIGGGAATINHNHTHNTLPHAHTPPSSSALPSPPTPSPIVVPNRNPVVNAQNDSAGNTTNNNNGVVDFNLLEEEEFQVQLALAISASDPDPHHDPAESAQIDAAKQISLGYSASLTDTQALAQFQSLRYRIIRITLGVRGNIHVSCVRFLFRNYNVINYDEKVMDGFYDVYGITSNLSERGKMPLLVDLQSTHVSRNVDCEVILVNRIVDIELNQLEKKAYNLFKECRVSELGLILSGLLQKLADVVANRMGGPVGNADKIAKRWDVRSRELRDSLRTIVLPLGSLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGSDDGAVNLIKADDGCEYIVDMMGAPGTLIPAEVPSSQLQNDGFAVRGCAEIIGLPNNTNLMFDDGTGVPGIFSDRVRISTMGQVQTEELLDMGCHQTKPDEINRVKVNETGGFEHKEAHGGSSHTESSPAKNMHVKNVSKYALGAAKNPEFAPELHTVKLESGASPPPDLFSYINPKDWSVDKVNEKNDVDTIQADPNRLLLSYKKSVIPFQVVGSASNTRFCQSADRLSEQQEELHTDAIEFYDSSQSDNTRNGFATVSGRDNDLEKPNPSFIGSISINTHKACKEKCLDSSLSNENGLRNKIGASFNNIESGKDSAIQINETVNGDCILYDGKGEKVNSVLGEGTEWEIQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRILHRPNLVLDEKRRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDRHWVVKVCDFGLSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTSIPWKGLNPMQVVGAVGFQNKRLEIPEDVDPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRLQRLVVRKTG. 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03491 950 MobiDBLite consensus disorder prediction 443 462 - -
Seca7g03491 950 Pfam Ethylene-responsive protein kinase Le-CTR1 162 359 - -
Seca7g03491 950 ProSiteProfiles Protein kinase domain profile. 686 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03491 950 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524
Seca7g03491 950 Gene3D Phosphorylase Kinase; domain 1 679 763 - -
Seca7g03491 950 PRINTS Tyrosine kinase catalytic domain signature 799 817 IPR001245 GO:0004672|GO:0006468
Seca7g03491 950 PRINTS Tyrosine kinase catalytic domain signature 846 856 IPR001245 GO:0004672|GO:0006468
Seca7g03491 950 PRINTS Tyrosine kinase catalytic domain signature 909 931 IPR001245 GO:0004672|GO:0006468
Seca7g03491 950 PRINTS Tyrosine kinase catalytic domain signature 760 773 IPR001245 GO:0004672|GO:0006468
Seca7g03491 950 PRINTS Tyrosine kinase catalytic domain signature 865 887 IPR001245 GO:0004672|GO:0006468
Seca7g03491 950 Pfam Protein tyrosine and serine/threonine kinase 686 938 IPR001245 GO:0004672|GO:0006468
Seca7g03491 950 MobiDBLite consensus disorder prediction 577 597 - -
Seca7g03491 950 FunFam Serine/threonine-protein kinase isoform 1 677 764 - -
Seca7g03491 950 MobiDBLite consensus disorder prediction 18 75 - -
Seca7g03491 950 MobiDBLite consensus disorder prediction 53 75 - -
Seca7g03491 950 CDD STKc_MAP3K-like 692 938 - -
Seca7g03491 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Seca7g03491 950 MobiDBLite consensus disorder prediction 37 52 - -
Seca7g03491 950 MobiDBLite consensus disorder prediction 20 36 - -
Seca7g03491 950 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 208 946 - -
Seca7g03491 950 SUPERFAMILY Protein kinase-like (PK-like) 676 939 IPR011009 -
Seca7g03491 950 SMART serkin_6 686 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03491 950 Gene3D Transferase(Phosphotransferase) domain 1 765 947 - -
Seca7g03491 950 FunFam Serine/threonine-protein kinase CTR1 765 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03491 Seca-Chr7 105409756 105418729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03491 637 944 MAP Kinase Kinase Kinase AT5G11850 79.032 9.48e-175 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca7g03491 PK_Tyr_Ser-Thr 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03491 K04424 - gmx:100779137 1347.03