Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03471 ATGACTCCTGTTTCTCTGAACCCACCAGGCCCTTCCTTACAAGGTCAAAACCAACTCTTCATTCCTCCTAATAATCAGGACTGCCGTGCCTTATTTAACATACTTGATCGAAGGCAAACCATAGAGATTGGAGATTTCAGAGAAAATGATCATCAGGAGGATAATAAGCTGCTGGTGTTGCATGATGGATCATCATCAAGCAATTATCAAGTTTGCAACAATTCATCCTTCATTTCATCACCTCAGCCAGTTATGGAAGATCGAAGTAGCGCATGTGGCCCTAATTTATCCTTCTCCTCCAAAATGGAGGATCAAGAAGATAGCAAAAATTGTCACGGGTCTGCCAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATGAGACCGAGTAGCACTCCAACCACTACTCATGACAAAGCAATCAACACTACTACTACTACTCCTCCTCTAAGTCCAAGATTTCAAAATCAAGGGCATGAAAACAGGTACAGCCAAAGAAGCCCTCGTAACAACAACAATAGCACCACTACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCGCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTGGCCACTCCTTTAAACAATGCATCATCTACAAAGACGAGAGTGCATCATCATAACAAGGAAAAGAAGCCTCGAATTAACCATTTTGGACAGTTCAAGAATAAGCACAAGGCCACTACTACAACTAGTGCTGCAGCTGGTTCATCTCAGGGTGTGAGGAAGCTTGAATGTTTCAAGGACTTAGCAATAAGTTTGAGGAATAACTCGGGCTTTCAGCAAGTGTTTCCAAGGGATGAAGTAGCTGAGGCGGCGCTGCTTCTGATGGATTTATCTTGTGGTTTTGTTCACTCTTAA 966 0.4306 MTPVSLNPPGPSLQGQNQLFIPPNNQDCRALFNILDRRQTIEIGDFRENDHQEDNKLLVLHDGSSSSNYQVCNNSSFISSPQPVMEDRSSACGPNLSFSSKMEDQEDSKNCHGSAKWMSSKMRLMKKMMRPSSTPTTTHDKAINTTTTTPPLSPRFQNQGHENRYSQRSPRNNNNSTTTRVCSDCNTSSTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATPLNNASSTKTRVHHHNKEKKPRINHFGQFKNKHKATTTTSAAAGSSQGVRKLECFKDLAISLRNNSGFQQVFPRDEVAEAALLLMDLSCGFVHS. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03471 321 Gene3D - 176 267 IPR013088 GO:0006355|GO:0008270
Seca7g03471 321 ProSitePatterns GATA-type zinc finger domain. 182 207 IPR000679 GO:0006355|GO:0043565
Seca7g03471 321 Pfam GATA zinc finger 182 215 IPR000679 GO:0006355|GO:0043565
Seca7g03471 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 216 - -
Seca7g03471 321 ProSiteProfiles GATA-type zinc finger domain profile. 176 212 IPR000679 GO:0006355|GO:0043565
Seca7g03471 321 SMART GATA_3 176 236 IPR000679 GO:0006355|GO:0043565
Seca7g03471 321 MobiDBLite consensus disorder prediction 130 183 - -
Seca7g03471 321 CDD ZnF_GATA 181 218 IPR000679 GO:0006355|GO:0043565
Seca7g03471 321 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 48 321 - -
Seca7g03471 321 MobiDBLite consensus disorder prediction 128 183 - -
Seca7g03471 321 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03471 Seca-Chr7 105147727 105150037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03471 114 320 C2C2-Gata Transcription Factor Family AT4G26150 39.556 7.32e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca7g03471 GATA 7.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03471 - - gmx:100780326 338.191