Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03449 ATGATGAAAGGTTTGGTGGTGGATGAAAATATGTCCAATTTGACTTCTGCTTCAAGTGAGATAAGTGCTTCTTCAGGAACCAGGAATGAAAATGGTTCTCTCTATCCTCAACAGTACTCCTCTACTTCAACAAATCAAGAACCACAACCTAGAAAGAAGAGAAGCCTTCCTGGACACCCAGATCCTGAGGCTGAAGTGATAGCCTTGAGTCCCCACACACTATTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGGAGAGGCCATAATTTGCCATGGAAACTGAAGAAAAGAACTAGCAAAGAAATAAGAAAGAAAGTATATGTGTGCCCAGAGGCAACATGCGTTCACCATGACCCATCAAGGGCCCTTGGAGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAGCGTTATGCAGTTCAATCGGATTGGAAAGCCCACTCCAAAATCTGTGGCACTAGAGAGTATAAATGTGACTGTGGAACCATTTTCTCTAGGAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGTTAGAGCAATAACAGCAGTCAACCCTCTATTCTCCTCTCACACCCAACTCCATACCCAAGGCCTTCAAACACCATTAGTCAAAAGAGAACAAGACCAATTCAATTTAAGACCAGAAATTCCATCATGGTTAACTTTCTCACCACCACCACCACCACTACTCCCAACAACACATTTCAACCAACCCTTATTACTCCACCACCATGAAAACCCTAACCCTACTACTTTCCTTCCTCCTTCTTTGATAAACTCAAGTACTAGTAGTGCTTCTCCTCACATGTCTGCCACTGCTTTGTTGCAAAAGGCATCACAAATAGGTGTAACAGTAAGCAACAAAACTACACCATCTCCATCCATGGTTAGGCCCCACTTACAGCAGCAGGGTCATCACGTGCCTGAATGTACAACGACAACAAGAGGAGGAGGAGGAGGGTATATGGCTTCATCTTCAACTGTTTCTGGAATGGTTATGCCTTCACGTGAAGAAATAGGGACTGGTGGGTTTGCTTATGGTTTGGCATCTTATGGGAATAAAGCTGCAATCACCTCAGCTTACTTTGAAGATGGTAGTAGTGCTGCCAACACTGAAGAAGCATCTTCTCTTTTCCATGATATGATGGCTAGTACTGTGCCATCTGCTAGTGGGTTTGAGAGCTCACCCTTTGATATGAGGGGGTCAATGTTTAATCCACAAAGAGATAATAATAACTTTCAGGAACTTGTTGTTTCAAAATCAACACAATCCCAGTTTAGTAAAAGCAGCAACATTAAGGGTTCTGGTGGAGTTGGTGCTAATGATGATGATGAAATGACAAGGGATTTTCTGAGTCTTGGAGCATTTTCTCAAAGAGATTTGTTCAATATGTCTGGGATTGATCCTTTGGGTTCTTCATCATATGGCAAGCAAAAGCATAACCAAGCGCCTTGGAGAGGTTAA 1569 0.4289 MMKGLVVDENMSNLTSASSEISASSGTRNENGSLYPQQYSSTSTNQEPQPRKKRSLPGHPDPEAEVIALSPHTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKKRTSKEIRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAQESVRAITAVNPLFSSHTQLHTQGLQTPLVKREQDQFNLRPEIPSWLTFSPPPPPLLPTTHFNQPLLLHHHENPNPTTFLPPSLINSSTSSASPHMSATALLQKASQIGVTVSNKTTPSPSMVRPHLQQQGHHVPECTTTTRGGGGGYMASSSTVSGMVMPSREEIGTGGFAYGLASYGNKAAITSAYFEDGSSAANTEEASSLFHDMMASTVPSASGFESSPFDMRGSMFNPQRDNNNFQELVVSKSTQSQFSKSSNIKGSGGVGANDDDEMTRDFLSLGAFSQRDLFNMSGIDPLGSSSYGKQKHNQAPWRG. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03449 522 MobiDBLite consensus disorder prediction 502 522 - -
Seca7g03449 522 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Seca7g03449 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Seca7g03449 522 Gene3D Classic Zinc Finger 60 129 - -
Seca7g03449 522 FunFam protein indeterminate-domain 12-like 59 127 - -
Seca7g03449 522 MobiDBLite consensus disorder prediction 1 64 - -
Seca7g03449 522 MobiDBLite consensus disorder prediction 323 344 - -
Seca7g03449 522 MobiDBLite consensus disorder prediction 454 479 - -
Seca7g03449 522 SMART c2h2final6 121 151 IPR013087 -
Seca7g03449 522 SMART c2h2final6 80 102 IPR013087 -
Seca7g03449 522 SMART c2h2final6 156 176 IPR013087 -
Seca7g03449 522 Gene3D Classic Zinc Finger 134 213 - -
Seca7g03449 522 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Seca7g03449 522 MobiDBLite consensus disorder prediction 454 471 - -
Seca7g03449 522 Pfam Zinc-finger double-stranded RNA-binding 80 102 IPR022755 -
Seca7g03449 522 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
Seca7g03449 522 MobiDBLite consensus disorder prediction 9 51 - -
Seca7g03449 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 498 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03449 Seca-Chr7 104446088 104449889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03449 7 326 IDZ Gene Family AT1G55110 57.101 1.09e-117 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g03449 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03449 K25870 - vvi:100257789 575.089