Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03445 ATGGAATCTTTTAATGGCAATGGAGATCATGCTGTCAATGAGACTAGCAACAATGATACACATGTTGGTGATTCAGAGGATAATGGTGGTCAGGAACCATTCATTGGAATGGAATTTGAGTCCCGGGAAGATGCTTATTCATTCTACACCCGTTATGCTAAATGTGTTGGATTTGGCGTGTCAATTAAAACTAGTCGCCGTTCAAAAAGTTCTAGAGAATTTATTGATGTGAAATATGCTTGCACGAGATATGGGAAGAAACGAGAATCTACAACACTTAATCCACGTCCTTATTTCAAGGTCGAATGTGAGGCTAGTTTACGTATTAAAAGAAGTTGTAATGGAAAATGGATTGTTCATAGCTTCATCAAAGATCACAATCATGAGCTTTTTCCAGCATATGCACACTATTTTCCTTGCCACAGAGGCATCAATCAAGCTCAAAAGCAATGCATTGAAACTTTGCAACATGTTGGAGTGAGAACAAGCAAAATTTATGCCACGATGGCCAAACAACATGGAGGATATGAAAACATTGGCTGCTTGGAGAAAGATATCAGAAATCATTTGGATAAGAGTCGTCGTTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTGGAGTGTTTTATGCTCATGCAAGAAGAAAACCCAAGATTTTATTATGCAATTGATTTGGATGATGAAGATCGTGTGAAAAATATACTTTGGGTGGATGCAAAAGGTAGAGATGACTATGAAGAGTTTGGAGATGTAATTTCATTTGATACAACATACATCACAAATAAGTATAAAATGCCATTTGCTCCATTCATTGGGGTGAATAATCACTTCCAGTCAAGATTACTTGGTTGTGCATTACTAGCAGATGAGACTTCAAAAACTTTCACATGGTTGATGAAAACATGGCTTAGAGCTATGGGTGGAAAGCCTCCAAATGCAATAATTACAAATCAAGATAAAGCAATGAAATCAACTATCAAAGAGATATTTCCAAGTGCTCGACATCGATTTTGCCTTTGGCATATACTGAGGAAGGTACCTGAGAAGCTTAGTCATGTATTAAGAAAACATGAAGATTTCATGACATTTCTTAACACATGCATTTACAAGTCTTGGTCAAAGAAGCAATTTGAAGATAAATGGCAAGAAATGGTTGAAAAATTTGAACTGTTGGGGCATGAATGGATTCAATCTTTATTTGAAGAACGAGAGCATTGGGTTCCTGTTTACATGAAAGATACATTTATTGGTGGCATGTCAACAACTCAAAGATCAGAGAGCATCAACTCATTTTTTGACAAATATGTAAGTAAAAAAACTTCTTTAAAGGAATTTGTTGAAAAATATAAAGTTGCTTTACAAGATAGAGAAGAAGCAGAAATGCAAGCTGACTTTAATACATGGCACAAGCAACCTGTTCTTAAGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATTTATACACATGAAGTCTTCAAGAAATTCCAAGTTGAAGTTCTAGGATTATCTGGATGTCATTTTATGAAAAAGAATGAAAATGGTCAGATTACCACTTTTCAAATCCTAGACTTTCAGAAAGATGAAGAGTTTGTTGTAGAGTGGGATGCATCAAAAATAGAAATTTCTTGCTCATGCCATTTATTTGAGTATAATGGATATCTTTGTAGACATTCATTAATGGCACTCCAAGTTGTTGGTGTCTTTGCTGTCCCGTCAAGCTATATTTTGAGAAGATGGACCAAAGATATTAGAAGCAAGCATCTTGAAAGAAAAATGAATGACAATGCCAATACCAAAAAGGAGAGATATGATCACTTATATCAAAAGACCATTGAATTGCTTGAGGAAGCATCATTGAGTAATGAGAGTTTCAATGTTGTAAATCATGCACTTGAAGAGACCTTGAAACGATGTGCAAGCATTAACCAGTCTTTGAAAATTGACAAAGAAAGGGTTGGTAAGAATGTTTTACATGAGAAGCAGCTACTTGATCCCATAGTGTCAAAAACAAAAGGGGCCCCAAGAAGAATAAAGAGTGCTATTGAGAAAGGTTGTAAGAAAACATCAAGTGGTAAAGTAAAAAAGTATGGATTCGTTGAAAAAGACACAATGAGTACACCTGATGTTCTCAATGATGAAGCAGTAGCTGCATCAATACGAATGATATGA 2175 0.3563 MESFNGNGDHAVNETSNNDTHVGDSEDNGGQEPFIGMEFESREDAYSFYTRYAKCVGFGVSIKTSRRSKSSREFIDVKYACTRYGKKRESTTLNPRPYFKVECEASLRIKRSCNGKWIVHSFIKDHNHELFPAYAHYFPCHRGINQAQKQCIETLQHVGVRTSKIYATMAKQHGGYENIGCLEKDIRNHLDKSRRLALESGDANAMLECFMLMQEENPRFYYAIDLDDEDRVKNILWVDAKGRDDYEEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLADETSKTFTWLMKTWLRAMGGKPPNAIITNQDKAMKSTIKEIFPSARHRFCLWHILRKVPEKLSHVLRKHEDFMTFLNTCIYKSWSKKQFEDKWQEMVEKFELLGHEWIQSLFEEREHWVPVYMKDTFIGGMSTTQRSESINSFFDKYVSKKTSLKEFVEKYKVALQDREEAEMQADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEVLGLSGCHFMKKNENGQITTFQILDFQKDEEFVVEWDASKIEISCSCHLFEYNGYLCRHSLMALQVVGVFAVPSSYILRRWTKDIRSKHLERKMNDNANTKKERYDHLYQKTIELLEEASLSNESFNVVNHALEETLKRCASINQSLKIDKERVGKNVLHEKQLLDPIVSKTKGAPRRIKSAIEKGCKKTSSGKVKKYGFVEKDTMSTPDVLNDEAVAASIRMI. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03445 724 Coils Coil 443 463 - -
Seca7g03445 724 SMART 26again6 543 570 IPR006564 GO:0008270
Seca7g03445 724 Pfam FAR1 DNA-binding domain 47 132 IPR004330 -
Seca7g03445 724 ProSiteProfiles Zinc finger SWIM-type profile. 532 568 IPR007527 GO:0008270
Seca7g03445 724 MobiDBLite consensus disorder prediction 1 34 - -
Seca7g03445 724 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 641 IPR031052 GO:0006355
Seca7g03445 724 Pfam MULE transposase domain 252 345 IPR018289 -
Seca7g03445 724 Pfam SWIM zinc finger 540 566 IPR007527 GO:0008270
Seca7g03445 724 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03445 Seca-Chr7 104275480 104277971 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g03445 MULE 4.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03445 - - mtr:112418473 1099.35