Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03426 ATGTTTCACTCAAGCGTGATGGATTCTCAACCACAACAAGAGCAAGAGCAAGAACAACAACAACAACAACAACAACATGTGGTTGATATGTCAGCTTACAAGAATTCTGCAGAAAATGGGTTCTTCAAGGAGTGCCCTCACCCATATGATAAGCAAAAGAAAGCCCTGGGTGATGAGCTTGGGCTTGACCCTTTGACAATCAAGTTTTGGTTCCAGAACAAGCGTACCCAAATGAAGGCTCAACAAGAACGCCATGAGAATGTTCTTCTGAAGGGTGAGAACGAAAAGCTTCGTGTTGACAATGCTAGGTACAAGGAGGCACTGAGTCATGCTACATTCCCTACCTGTGGAGGGCCCTCTGTTGGTGAAATTTCCTTTGACGAAAAACACTAG 393 0.4453 MFHSSVMDSQPQQEQEQEQQQQQQQHVVDMSAYKNSAENGFFKECPHPYDKQKKALGDELGLDPLTIKFWFQNKRTQMKAQQERHENVLLKGENEKLRVDNARYKEALSHATFPTCGGPSVGEISFDEKH. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03426 130 Gene3D - 2 80 - -
Seca7g03426 130 ProSiteProfiles 'Homeobox' domain profile. 42 81 IPR001356 GO:0003677
Seca7g03426 130 MobiDBLite consensus disorder prediction 1 33 - -
Seca7g03426 130 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 36 130 IPR042160 -
Seca7g03426 130 Pfam Homeodomain 41 79 IPR001356 GO:0003677
Seca7g03426 130 MobiDBLite consensus disorder prediction 1 32 - -
Seca7g03426 130 SUPERFAMILY Homeodomain-like 41 86 IPR009057 -
Seca7g03426 130 CDD homeodomain 41 82 IPR001356 GO:0003677
Seca7g03426 130 SMART HOX_1 22 85 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03426 Seca-Chr7 103768077 103768823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03426 8 130 Homeobox Transcription Factor Family AT4G21750 54.839 7.79e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca7g03426 Homeodomain 2.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03426 K09338 - cpap:110806758 147.902