Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03413 ATGATTGAATTTCTTTCACAACAGAATGGTGAGAACACCAATAGTGAACTGCCTTGGCTACCAACTGAATCCTCCTATATTGAGTCAACTCAGTGGACTCGAATTCAAGATCAAATCTTTGAGAAAACCCTTGTGATCTTCCCGAAAGGTACTCCAAATCGTTGGGAAAAAGTTGCTAAACAAGTGGGCAAGTCGCCAGCGGCAATTAAAAAACACTATGAGGTATTTCTCCATGACCTGTTTGAGATTGAGTCAGGCCAAGTCAAGTTGTCAAGTTACTTAGATGACCCAACACCACCAGAGGCATTAATCAAGAATAGTGTTTCAATGGAGTTAGCCCCTCGGCATAGAAAGAAATGGGTGACTTGGACTAAACAGGAACATAGGTTATTTTTTATTGGCCTTCAGAAATATGACAAGGGTCATTGGAAAAACATTATAAGAAATGTTGTCACAACAAGAACTGCATCTCAAGTTGCAAGCCATTCCTAG 492 0.4024 MIEFLSQQNGENTNSELPWLPTESSYIESTQWTRIQDQIFEKTLVIFPKGTPNRWEKVAKQVGKSPAAIKKHYEVFLHDLFEIESGQVKLSSYLDDPTPPEALIKNSVSMELAPRHRKKWVTWTKQEHRLFFIGLQKYDKGHWKNIIRNVVTTRTASQVASHS. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03413 163 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 162 IPR006447 GO:0003677
Seca7g03413 163 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Seca7g03413 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 163 IPR017930 -
Seca7g03413 163 FunFam Transcription factor SRM1 24 90 - -
Seca7g03413 163 Pfam Myb-like DNA-binding domain 122 162 IPR001005 -
Seca7g03413 163 CDD SANT 32 77 IPR001005 -
Seca7g03413 163 Gene3D - 120 163 - -
Seca7g03413 163 SUPERFAMILY Homeodomain-like 116 162 IPR009057 -
Seca7g03413 163 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 162 IPR043363 -
Seca7g03413 163 Gene3D - 24 90 - -
Seca7g03413 163 SMART sant 28 79 IPR001005 -
Seca7g03413 163 SMART sant 119 163 IPR001005 -
Seca7g03413 163 CDD SANT 122 162 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03413 Seca-Chr7 103346414 103355306 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g03413 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03413 - - ath:AT5G04760 150.599