Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03407 ATGGACACTGCTGAGCAGATTTCCGAAGAATGGAATTCTCTCAGTGGAGTGTACACAGCGGAGGAAGCTGACTTTATGACTCAGTTACTTGATGTGTCTGCATTTTGGCCTGCCCATCATGAATCCAATGTGATGACAGAACCAATGATCAATTATCCGAATTCAAATTCAATAGTTGATAATAATACCAATTTGTTTTATTTCTCCCAAGGGATTACTACTGACATTGGAGGAACATACTCTTTAGATCCGCAAATTAATTACTTTCCCTTCGGGGATACCAATTTCACTGCGATAGAGGATAAAGGCAGCGACCTGAACAACCCACCAAAAAGATTTAAGAGCTCAATGACAATGGAGGTCTCAGAGAACTGCAGGATGAATGATAAGAATCCAAACGAAGCTTGCCACCTCTTTTCAGAGGACGATTCTTTGGAGCTAAAAAGAGGGGCATCTTCAACTTCAAGCCTCACCCCAAAAGATTTAAATTGCAAATCAAAAGCTAACAAAGGTCTTGCCACTGATCCACAGAGCCTTTATGCAAGAAGAAGAAGAGAGAGAATAAATGAGAGGTTGAAAATTCTACAAAATCTTGTCCCTAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTCAAGTTTTTGCAACTCCAAATAAAGCTTCTGAGCTCTGATGATATGTGGATGTATGCTCCCATTGCTTACAATGGAATAAACATTGGACTTGACCTCAATATTCCTCCAAGAAAACAATCACAGGGACCACAACACAACAATTAA 798 0.401 MDTAEQISEEWNSLSGVYTAEEADFMTQLLDVSAFWPAHHESNVMTEPMINYPNSNSIVDNNTNLFYFSQGITTDIGGTYSLDPQINYFPFGDTNFTAIEDKGSDLNNPPKRFKSSMTMEVSENCRMNDKNPNEACHLFSEDDSLELKRGASSTSSLTPKDLNCKSKANKGLATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGINIGLDLNIPPRKQSQGPQHNN. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03407 265 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 73 244 - -
Seca7g03407 265 Gene3D - 176 230 IPR036638 GO:0046983
Seca7g03407 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Seca7g03407 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 238 IPR036638 GO:0046983
Seca7g03407 265 CDD bHLH_AtIND_like 173 235 - -
Seca7g03407 265 SMART finulus 178 227 IPR011598 GO:0046983
Seca7g03407 265 MobiDBLite consensus disorder prediction 150 178 - -
Seca7g03407 265 Pfam Helix-loop-helix DNA-binding domain 182 222 IPR011598 GO:0046983
Seca7g03407 265 FunFam Basic helix-loop-helix transcription factor 173 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03407 Seca-Chr7 103153030 103154398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03407 87 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43175 49.727 1.90e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g03407 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03407 - - gmx:100817334 214.157