Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03404 ATGACCATCCTTAGGAATCTTTCTTCGAACAATCTTCAAGGCTCCATTCCAATTGAACTGTCACGGATTGGTAATTTGGATATGCTGGATATTTCAAACAATAATATAAGTGGCTCCATCCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTGAATCTGAGCAGAAACCATTTAACAGGATTTATTCCAGCAGAATTTGGTAATTTGAAAAGTGTAATGGAAATTGATCTTTCAAATAATGAACTCTCTGGCTTGATTCCTGAAGAACTTGGTCAGCTTCAGAACATAGCATTGTTGAGGCTTGAAAACAACAAATTAACTGGGGATGTGACGTCACTTGTAAATTGTCTTAGTCTCTCTCAGCTCAATGTGTCCTATAACAATTTAGTTGGTGTTATTCCCACGAGCAACAACTTTTCCAGGTTCCCCCCTGACAGTTTCATTGGAAACCCTGATCTTTGTGGTAATTGGCTGAATTTGCCTTGTCATGGTGCTCACCCTGCAGAGCGAGTTACATTATCTAAGGCAGCTATTCTGGGAATTACTCTCGGTGCCCTTGTAATTCTTCTTGTGGTACTGCTGGCAGCTTGCCGACCACACAATCCATCTCCATTTCCTGATGGGTCACTTGATAAACCAGTTAATTACTCACCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAGGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGATATGGTGCATCAAGTACAGTTTATAAATGCGTTCTAAAGAATTGCAAACCAGTGGCCATCAAGAGGCTCTATTCTCACTATCCCCAATGCTTGAAAGAATTTGAAACTGAACTTGAGACAGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCCCCATATGGCCACCTTCTGTTTTATGACTACATGGAGAATGGCAGTCTATGGGATCTTCTTCATGGTCCTACCAAGAAGAAAAAGCTTGACTGGGTTCTGCGCGTAAAAATAGCACTAGGAGCAGCCCAAGGGCTTGCTTATTTACACCATGATTGCAGTCCTCGTATCATCCACAGGGATGTGAAATCCTCAAATATTTTACTAGATGCAGACTTTGAGCCCCATCTCACTGATTTTGGCATTGCCAAAAGTCTCTGCCCCTCAAAGTCCCATACTTCTACTTACATAATGGGCACAATTGGATATATCGACCCTGAGTATGCAAGAACTTCGCGGCTCACTGAGAAGTCTGATGTGTACAGCTATGGTATTGTTTTGCTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCATCATTTGGTTTTGTCCAAGACAGCAAATAATGCTGTAATGGAAACCGTTGATCCTGACATTACTGCCACATGCAAGGACCTAGGAGCAGTAAAAAAGGTTTATCAACTTGCTCTATTATGCACAAAGAGGCAACCAGCTGATAGGCCCACAATGCATGAAGTGACACGTGTGCTGGGAAGTCTTGTGCCATCGGCCACCCCACCAAAACAACCAGCTCCATTACCACCTGCATCTGCCAAAGTACCATGCTACATGGATGAGTATGCAAATCTCAAGACTCCACACTTAGTGAACTGTCCATCCATGAGCACCTCTGATGCCCAGCTCTTCCTCAAGTTTGGAGAGGTAATCTCTCAGAACAGTGAGTGA 1728 0.4282 MTILRNLSSNNLQGSIPIELSRIGNLDMLDISNNNISGSIPSSLGDLEHLLKLNLSRNHLTGFIPAEFGNLKSVMEIDLSNNELSGLIPEELGQLQNIALLRLENNKLTGDVTSLVNCLSLSQLNVSYNNLVGVIPTSNNFSRFPPDSFIGNPDLCGNWLNLPCHGAHPAERVTLSKAAILGITLGALVILLVVLLAACRPHNPSPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWVLRVKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLVLSKTANNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSATPPKQPAPLPPASAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03404 575 Gene3D Phosphorylase Kinase; domain 1 218 320 - -
Seca7g03404 575 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 216 320 - -
Seca7g03404 575 ProSiteProfiles Protein kinase domain profile. 245 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03404 575 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 512 - -
Seca7g03404 575 Gene3D Ribonuclease Inhibitor 3 172 IPR032675 -
Seca7g03404 575 SMART serkin_6 245 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03404 575 Pfam Protein kinase domain 248 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03404 575 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 41 164 - -
Seca7g03404 575 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 321 522 - -
Seca7g03404 575 CDD STKc_IRAK 251 514 - -
Seca7g03404 575 ProSitePatterns Protein kinases ATP-binding region signature. 251 273 IPR017441 GO:0005524
Seca7g03404 575 SUPERFAMILY Protein kinase-like (PK-like) 222 511 IPR011009 -
Seca7g03404 575 Gene3D Transferase(Phosphotransferase) domain 1 321 520 - -
Seca7g03404 575 SUPERFAMILY L domain-like 6 157 - -
Seca7g03404 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Seca7g03404 575 Pfam Leucine rich repeat 25 84 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03404 Seca-Chr7 102993005 103001778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03404 6 574 Receptor kinase-like Gene Family AT5G62230 62.281 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Seca7g03404 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03404 K20718 - gmx:100782307 1022.69