Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03372 ATGGACGGAGGTGCTCCGTACAATCTTCGTACTGTCGAAGAGGTCTTCAGGGATTTCAAGGGTCGCAGAGCTGCCTTGATTAAGGCCCTCACCTCTGATGTCGAAGAGTTCTACCAGCAGTGCGATCCTGACAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAAGAAGTGCCCCCAGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTAGCCTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAACGACTATTTAATATGATCAATGATCTTCCGACAATATTTGAAGTTGTAACAGGGATGGCCAAGAAACAAGGAAAGGAGAAGTCATCAGTCTCTAATCATAGCAGTAACAAATCCAAATCAAACTCTAAGAGAGGTTCTGAATCTCAGGCGAAGTATTCAAAACCAATGCAATCAAAGGACGAGGACGAGGATGGTCTGGGTTTGGAAGAGGAAGATGAAGAGGAACATGGAGAGACATTGTGTGGGGCATGTGGAGAGAGCTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCACGGAAAATGTGTGAAGATTACCCCTGCAAGGGCTGAGCATATCAAGCAATACAAATGTCCTTCTTGCAGCAATAAGAGAGCTCGACCTTGA 768 0.4544 MDGGAPYNLRTVEEVFRDFKGRRAALIKALTSDVEEFYQQCDPDKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESQAKYSKPMQSKDEDEDGLGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03372 255 FunFam PHD finger alfin-like protein 194 250 - -
Seca7g03372 255 CDD PHD_AL_plant 201 251 IPR044104 -
Seca7g03372 255 SMART PHD_3 201 249 IPR001965 -
Seca7g03372 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Seca7g03372 255 Pfam PHD-finger 202 251 IPR019787 -
Seca7g03372 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 250 IPR013083 -
Seca7g03372 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Seca7g03372 255 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Seca7g03372 255 PANTHER CPG BINDING PROTEIN 8 254 IPR045104 GO:0006355|GO:0042393
Seca7g03372 255 MobiDBLite consensus disorder prediction 150 174 - -
Seca7g03372 255 MobiDBLite consensus disorder prediction 145 193 - -
Seca7g03372 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03372 Seca-Chr7 101528377 101535849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03372 1 254 Alfin-like Transcription Factor Family AT3G42790 76.863 3.21e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca7g03372 Alfin 3.5e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03372 K26274 - vvi:100247536 449.129