Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03355 ATGTCGACGGTGTACGTTCTGGAACCGCCGACGAAGGGGAAGGTTGTGGTGAACACGACGCGGGGCCCTCTGGACATTGAGCTGTGGCCCAAAGAGGCTCCCAAAGCCGTCAGGAACTTCGTCCAACTCTGCCTCGAAGGCTATTACAACAATACCATCTTCCACCGTATCATCAAGGACTTCCTCATCCAAGGTGGCGACCCCACCGCCACCGGCACCGGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTATCAAATTCAAGCACAGAGGTTTGGTTGCAATGGCTAATGCTGGATCGGCGAATTCCAATGGAAGTCAGTTTTTCATTACTCTCGACCGTTGTGACTGGCTTGATCGGAAGCATACCATTTTCGGAAAGGTCACGGGAGATACAATGTATAATCTGTTGAGACTGGGTGAAGTTGAAACCGATAAGAATGACCGGCCTTTAGATCCAGCCCCAAAGATATTGTCAGTTGAGGTAGGTTGTGATTATGATTAA 522 0.4904 MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLEGYYNNTIFHRIIKDFLIQGGDPTATGTGGESIYGGVFADEFHSRIKFKHRGLVAMANAGSANSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPAPKILSVEVGCDYD. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03355 173 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Seca7g03355 173 Gene3D - 2 171 IPR029000 -
Seca7g03355 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Seca7g03355 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Seca7g03355 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Seca7g03355 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Seca7g03355 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Seca7g03355 173 PIRSF Peptidylpro_ismrse 4 171 IPR024936 GO:0003755
Seca7g03355 173 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 172 - -
Seca7g03355 173 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Seca7g03355 173 CDD cyclophilin_CeCYP16-like 8 169 - -
Seca7g03355 173 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 167 IPR044666 -
Seca7g03355 173 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Seca7g03355 173 SUPERFAMILY Cyclophilin-like 14 168 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03355 Seca-Chr7 98881231 98882198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03355 9 168 U-box Gene Family AT5G67530 48.125 4.20e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03355 K12737 - gmx:100793148 319.316