Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03353 ATGTCTTCCCATGATGGCACCGCCACCGTAAACGTCATCATGGTGGCTGTAGACAAAGACAAAAACAGTGCTCACGCCTTCCGTTGGGCAATGAATCATGTTGATAACCCAATCATCATTGCAGTTCATGTTAAGCACAAAAACATTCTCCATCAGGGCACCAATGTTTTTCCTCCTGACGAAGACGATGTGGCTAATATTTTCGATCCCTTGCGTCAAATGTGTCTTCGTAAAGTCGTTAAGATGAAAGAAGCCGTAATCGATGATAGCGATGTTGTTGGGGGAATTTTGGAATATGCACAGAGAAATCACATCCCAACTATCGTTGTTGGTGCAGCCTCCTCCGCGACCAAGAACACTCTTCTGGCAAGGTCTCTAAACATGAGGATTGGAAGCAAAAAATTTAAAGGCCTTGATGTGTCAACGGCCATAATCAAAGCGGCCCCAGATTTTAGTTCTGTGTATGTAATTTCCAAAGGGAAGATAGTGAGATCTCGACCAGCAATGAGCCAGTTGGGAAATGTGGCTGCACAACCAAAACAACCATTTGGACTTACACATAGTGGATCAGAAAATGCAGCAAGGACACAAGCATTTAGAAGAGGGAGCACCAATAGTAGATTTGAAAGATCACCTCTACATGAGAGGCCAAGGATTTCTTCAGCTAGTCAGTCAATGGAGTACATTGATCTATCCATTAGTGGACAGAGGTCACCCTTATTTAGCCGTAACTCAAGCTCAGGTGGAAGTGACTCTTCAAGGTCATATAAGTTTGGTTCACCAGATGTAACTAAAAAGGATTCTGATTTAACCTTAAAATCAGAATCCCAACCCTCTGGAGATATGGAAGCTGAGATGAAAAGATTGAGGCTCCAATTGAAGCAAACTATGGACATGTACAGTGCAGCTTGCAAAGAGGCAATCTCAGCCCAAAACAAGGCTAAAGAGATTAATCAGTGGAAACTAGAAGAGACACGTAAGGTTGAGGAAGTTAGGTTGTCTAAAGAGGCAGCTCTTGCACAGGCAGAAGAGGAGAAGGCTAAAGCCAAAGCTGCCTTCAAAGCAGCTGAGGAAGCCATGAAAATGGCGGAAAAGGAAGCACAAATAAGATTGCATGCAGAGATGCAGGCTAGGAGACAGGCAGAAGAGAAGGATAAGTCATTAACTGTGTGGGCTCATAAGGATATTCGATATAGAAAATACACCATAGATGAAATTGAAACGGCTACTAAAAATTTCTCCCTATCAATGAAAATAGGTGAAGGTGGATTTGGACCTGTGTTTAAAGGCCATCTTGATCATACCCCAGTTGCAATCAAAATATTAAACCCTGAAGCATCCCAGGGAAGGAAGCAGTTCCAACAAGAGGTTGAGGTATTATCCAGTATAAGGCATCCTAATATGGTCCTCCTGCTTGGTGCATGTCCTGACTATGGATGCTTGGTGTATGAATACATGGAAAATGGTAGTTTAGAAGATAGATTATTGCGAAAAAATAACAGTCCCCCTATTCCATGGAGGAAACGTTTTGAAATAGCTGCTGAGATTGCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAGCCTATTGTGCACAGGGACCTTAAACCAGCAAACATACTCTTGGATCGAAATTTTGTGAGTAAAATAAGCGATGTTGGTCTTGCACGACTAGTCCCACCATCTGTAGCTGATTCTGTCACACAATATTACATGACTTCAGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTACCAACAAACAGGGAAGTTAACAACAAAATCAGATATATATTCTTTGGGGATAATGCTACTGCAGATAATCACAGTCAAGCCTCCTATGGGGCTTGCTCATCATGTCAGGAGGGCAATTGAAAATGGAAGTTTTTCAGATATGCTTGATCCTGTGGTGACTGATTGGCCAGTTGAAGAGGCTCTAACATTTGCCAAACTATCATTGAAATGTGCAGAGCTTAGCAAGAAGGACAGGCCTGGTCTTGCATCAGTAATAGTGCCAGAGCTTAGTCGTTTAAGAGACTTTGGGTGCACATTGCAGAATAACTGCCACATACCACGCCCTCCTACCCCTACACGAAGACCACAATCAAAGACATAA 2121 0.4276 MSSHDGTATVNVIMVAVDKDKNSAHAFRWAMNHVDNPIIIAVHVKHKNILHQGTNVFPPDEDDVANIFDPLRQMCLRKVVKMKEAVIDDSDVVGGILEYAQRNHIPTIVVGAASSATKNTLLARSLNMRIGSKKFKGLDVSTAIIKAAPDFSSVYVISKGKIVRSRPAMSQLGNVAAQPKQPFGLTHSGSENAARTQAFRRGSTNSRFERSPLHERPRISSASQSMEYIDLSISGQRSPLFSRNSSSGGSDSSRSYKFGSPDVTKKDSDLTLKSESQPSGDMEAEMKRLRLQLKQTMDMYSAACKEAISAQNKAKEINQWKLEETRKVEEVRLSKEAALAQAEEEKAKAKAAFKAAEEAMKMAEKEAQIRLHAEMQARRQAEEKDKSLTVWAHKDIRYRKYTIDEIETATKNFSLSMKIGEGGFGPVFKGHLDHTPVAIKILNPEASQGRKQFQQEVEVLSSIRHPNMVLLLGACPDYGCLVYEYMENGSLEDRLLRKNNSPPIPWRKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYYMTSAAGTFCYIDPEYQQTGKLTTKSDIYSLGIMLLQIITVKPPMGLAHHVRRAIENGSFSDMLDPVVTDWPVEEALTFAKLSLKCAELSKKDRPGLASVIVPELSRLRDFGCTLQNNCHIPRPPTPTRRPQSKT. 707
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03353 706 CDD STKc_IRAK 419 679 - -
Seca7g03353 706 SMART serkin_6 413 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03353 706 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 114 - -
Seca7g03353 706 MobiDBLite consensus disorder prediction 196 221 - -
Seca7g03353 706 Gene3D Phosphorylase Kinase; domain 1 381 485 - -
Seca7g03353 706 Pfam Universal stress protein family 12 119 IPR006016 -
Seca7g03353 706 Coils Coil 328 384 - -
Seca7g03353 706 Gene3D Transferase(Phosphotransferase) domain 1 486 686 - -
Seca7g03353 706 SUPERFAMILY Protein kinase-like (PK-like) 394 672 IPR011009 -
Seca7g03353 706 CDD STK_N 12 160 - -
Seca7g03353 706 Gene3D HUPs 3 130 IPR014729 -
Seca7g03353 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Seca7g03353 706 ProSiteProfiles Protein kinase domain profile. 413 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03353 706 MobiDBLite consensus disorder prediction 239 284 - -
Seca7g03353 706 Pfam Protein kinase domain 415 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03353 706 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 386 485 - -
Seca7g03353 706 PANTHER OS02G0152300 PROTEIN 13 685 - -
Seca7g03353 706 MobiDBLite consensus disorder prediction 239 259 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca7g03353 Seca-Chr7 98811187 98815052 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03353 82 691 Receptor kinase-like Gene Family AT5G12000 58.240 0.0 700
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca7g03353 Pkinase 2.5e-42 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03353 - - gmx:100786386 878.241