Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03339 ATGGCTGGTGCTTCTGATCCTATTATTACTACCAGTGCCACCACTAACCACAATAATGAGAGTACTTGTTCCAACAATGACACTAGTAATAATAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGAAAATGGGTTTCTGAGATCAGGCTTCCCAATAGCCGTGAGCGTATTTGGTTGGGCTCTTACGATACCCAAGAGAAGGCAGCCCGGGCCTTTGATGCAGCCCTTTACTGCTTACGTGGCCGCCGGGCTAATTTCAATTTCCCTGACACTCCTCTCAATTTGGAGATCAATGTGGCTGTTCATCACCAATCCCTTTCCCATCAGGAGATTCAAGAGGTTGCTGCAAAGTTTGCCAATGAACCACCATTACCAATGGAGCTGAGTACTCATGAAGAGGAAGAAGAACCGTCAGAGTCGCAACGTGGTGCCAATTCATTTGGGTCATTTGAGTCAAATAATTCTAAATCAAACGACAGCGTAACGGAGAGTACTTACCCTGATGTGTATGATTATGACTTGAGGACCATGGATTGGACCTTTTCGGACATGTTGGATGACTTGAATAGCTCCGATTTTAGCCTCTATTCTGAGTCAGACAAGATGCAGTTCTCGGGTGAGTTATTATATTCCACTCAACCAACAGTACCGTTTTTTGAGGATAATAATGGGGGAGAAATTGAAGGTGATGATGATGCCTTCTCTAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 741 0.4399 MAGASDPIITTSATTNHNNESTCSNNDTSNNKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRRANFNFPDTPLNLEINVAVHHQSLSHQEIQEVAAKFANEPPLPMELSTHEEEEEPSESQRGANSFGSFESNNSKSNDSVTESTYPDVYDYDLRTMDWTFSDMLDDLNSSDFSLYSESDKMQFSGELLYSTQPTVPFFEDNNGGEIEGDDDAFSNHSFLWSWNF. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03339 246 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Seca7g03339 246 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Seca7g03339 246 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Seca7g03339 246 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Seca7g03339 246 MobiDBLite consensus disorder prediction 142 164 - -
Seca7g03339 246 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Seca7g03339 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 193 - -
Seca7g03339 246 MobiDBLite consensus disorder prediction 7 31 - -
Seca7g03339 246 MobiDBLite consensus disorder prediction 1 31 - -
Seca7g03339 246 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Seca7g03339 246 MobiDBLite consensus disorder prediction 128 164 - -
Seca7g03339 246 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Seca7g03339 246 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Seca7g03339 246 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03339 Seca-Chr7 98306365 98307105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03339 28 121 AP2-EREBP Transcription Factor Family AT1G19210 71.277 4.96e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g03339 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03339 - - gmx:112999363 244.588